View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4747-Insertion-2 (Length: 754)
Name: NF4747-Insertion-2
Description: NF4747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4747-Insertion-2 |
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| [»] chr7 (4 HSPs) |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 684; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 8 - 754
Target Start/End: Complemental strand, 30959687 - 30958939
Alignment:
| Q |
8 |
cttctcaataatcttggtattataatacaatgtccataccaactaagcaaagttcacgggacaccgccaaaccaaccttagtactaaacaacatatattc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
30959687 |
cttctcaataatcttggtattataatacaatgtccataccaactaagcaaagttcacggaacaccgccaaaccagccttagtactaaacaacatatattc |
30959588 |
T |
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| Q |
108 |
atataattcaagcaatttattgtaacattaatatttgcacccaatcaagaacatgacacatttctattagaaacactttgtaggttgtacctgattgtca |
207 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30959587 |
atataattcaagcaatttattgtaacattaatgtttgcacccaatcaagaacatgacacatttctattagaaacactttgtaggctgtacctgattgtca |
30959488 |
T |
|
| Q |
208 |
taagtagaacttggactgcccaaatatgctgaaccataagggggtgttgggagggaaactctcctaggagcattggcctttggactactgttt-gagata |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30959487 |
taagtagaacttggactgcccaaatatgctgaaccataacggggtgttgggagggaaactctcctaggagcattggcctttggactactgttttgagata |
30959388 |
T |
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| Q |
307 |
aataacaagcacaaatattaacaattatttttgacagaaatgaacttgagactcnnnnnnnattcaatatgaaaaataatagagaataacactgaaggta |
406 |
Q |
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| T |
30959387 |
aataacaagcacaaatattaacaattatttttgacagaaatgaacttgagactctttttttattcaatatgaaaaataatagagaataacactgaaggta |
30959288 |
T |
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| Q |
407 |
atgaatcataatcttaccctagtagaccaagcgctactgcggccttatacttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctc |
506 |
Q |
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| T |
30959287 |
atgaatcataatcttaccctagtagaccaagcgctgctgcggccttatacttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctc |
30959188 |
T |
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| Q |
507 |
ttttcgtgaaagagaaatgttgtttgacatgatttccgcgaaattcacaaactaaagagatttcacaacaattcaggggatgaatttcaattattttgca |
606 |
Q |
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| T |
30959187 |
ttttcgtgtaagagaaatgttgtttgacatgatttccgcgaaattcacaaactaaagagatttcacaacaattcaggggatgaatttcaattattttgca |
30959088 |
T |
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| Q |
607 |
acatttaacaagtattaaatcaatattcattatctacctgaaaattatcaaaggccc-tagttggaatattgtcacaaaactccttcatcttgtcccaag |
705 |
Q |
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| T |
30959087 |
acatttaacaagtattaaatcaatattcattatctacctgaaaattatcaaaggcccttagttggaatattgtcacaaaactccttcatcttgtcccaag |
30958988 |
T |
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| Q |
706 |
gtccatctccaacaccaaccaatatgattgatagaggaaatttactgtg |
754 |
Q |
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| T |
30958987 |
gtccatctccaacaccaaccaatatgattgatagaggaaatttactgtg |
30958939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 683 - 754
Target Start/End: Complemental strand, 30955172 - 30955101
Alignment:
| Q |
683 |
aaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagaggaaatttactgtg |
754 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
30955172 |
aaactccttcaccatgtcccaaggtccatctccaacaccaaccaatatgattgaaagaggaaattttctgtg |
30955101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 566
Target Start/End: Original strand, 11688829 - 11688939
Alignment:
| Q |
456 |
cttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgaaagagaaatgttgtttgacatgatttccgcgaaattcaca |
555 |
Q |
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| T |
11688829 |
cttatactgagaaggaatttccatcaatgctgcaagtgcaaatgctgcttcttttcgtgaaggaggtgtattctttgacataatctccgtgaaattcaca |
11688928 |
T |
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| Q |
556 |
aactaaagaga |
566 |
Q |
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| T |
11688929 |
aactaaagaga |
11688939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 642 - 753
Target Start/End: Original strand, 11689036 - 11689147
Alignment:
| Q |
642 |
acctgaaaattatcaaaggccctagttggaatattgtcacaaaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagag |
741 |
Q |
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||||| |||||||| ||||| | || ||||||||| || ||| || |||||| ||||||| |||||||||||||||||||||||||| ||||| |||| |
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| T |
11689036 |
acctggaaattatcgaaggcacgagatggaatattatcgtcaaattctttcatcatgtcccatggtccatctccaacaccaaccaatataattgaaagag |
11689135 |
T |
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| Q |
742 |
gaaatttactgt |
753 |
Q |
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||| ||||||| |
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| T |
11689136 |
gaagcttactgt |
11689147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 641 - 754
Target Start/End: Complemental strand, 7474234 - 7474121
Alignment:
| Q |
641 |
tacctgaaaattatcaaaggccctagttggaatattgtcacaaaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgataga |
740 |
Q |
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||||||||||||||| |||||||| | ||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
7474234 |
tacctgaaaattatcgaaggccctggctggcatattgtcatcaaactccttcatcatgtcccaaggtccatctccaacaccaaccaatatgatcgaaaga |
7474135 |
T |
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| Q |
741 |
ggaaatttactgtg |
754 |
Q |
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| T |
7474134 |
ggaaatttactgtg |
7474121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 456 - 563
Target Start/End: Complemental strand, 7474443 - 7474336
Alignment:
| Q |
456 |
cttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgaaagagaaatgttgtttgacatgatttccgcgaaattcaca |
555 |
Q |
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||||||||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||| ||| |||||| || ||||| | ||||| |||||||||| |
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| T |
7474443 |
cttatactgagaaggaatttccatcaatgctgcgagagcaaatgctgcctcttttcgtgaaggaggaatgttcttcgacataagttccgtgaaattcaca |
7474344 |
T |
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| Q |
556 |
aactaaag |
563 |
Q |
| |
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|||||||| |
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| T |
7474343 |
aactaaag |
7474336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 238 - 357
Target Start/End: Complemental strand, 7474636 - 7474522
Alignment:
| Q |
238 |
gaaccataagggggtgttgggagggaaactctcctaggagcattggcctttggactactgtttgagataaataacaagcacaaatattaacaattatttt |
337 |
Q |
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|||||||||| ||||||||||||| |||||| | |||||||||||||| ||||||||||| |||||||| |||||||||||| |||| ||||| |
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| T |
7474636 |
gaaccataagacggtgttgggagggcaactctatttggagcattggccttccgactactgtttaagataaat---aagcacaaatatcgacaa--atttt |
7474542 |
T |
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| Q |
338 |
tgacagaaatgaacttgaga |
357 |
Q |
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| T |
7474541 |
tgtcagaaatgaacttgaga |
7474522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 7474858 - 7474788
Alignment:
| Q |
151 |
atcaagaacatgacacatttctattagaaacactttgtaggttgtacctgattgtcataagtagaacttgg |
221 |
Q |
| |
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||||||||||| ||| ||| ||||||| ||||| ||| ||||||||||||| ||||||||||||||||| |
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| T |
7474858 |
atcaagaacattgcacgttttcattagaagcacttcgtaagttgtacctgattttcataagtagaacttgg |
7474788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 743
Target Start/End: Complemental strand, 44131205 - 44131152
Alignment:
| Q |
690 |
ttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagagga |
743 |
Q |
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||||||| |||||| |||||||||||||| |||||||| || ||||| |||||| |
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| T |
44131205 |
ttcatctcgtcccatggtccatctccaactccaaccaaaataattgagagagga |
44131152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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