View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4747-Insertion-3 (Length: 602)
Name: NF4747-Insertion-3
Description: NF4747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4747-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 8 - 602
Target Start/End: Original strand, 11535274 - 11535872
Alignment:
| Q |
8 |
cttgtagatagactaaagtaagaggagtgttatgaacggcctcttttaactgtctctctaacatctactctgttatcggatgaaattcacatggatacta |
107 |
Q |
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| T |
11535274 |
cttgtagatagactagagtaagaggagtgttatgaacggcctcatttaacggtctctctgacatttactctgttatcggatgaaattcacatggatacta |
11535373 |
T |
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| Q |
108 |
cctacactttaataatggattttgtgtaaagtagtaagacacgcatgagtttctttcattaaaaaagtgagtgttagagaaggtaatagaaagaaaatgt |
207 |
Q |
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| T |
11535374 |
cctacactttaataatgaattttgtgtaaagtagtaagacatgcatgaatttctttcattaaaaaagtgagtgttagagaaggtattaaaaagaaagtgt |
11535473 |
T |
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| Q |
208 |
tgttagcatttttcgtagagtaaagttagtaacacattagtggcccaatagcatgccaaagatgttcattcatattttaaattgagttgttaaataaaac |
307 |
Q |
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| T |
11535474 |
tgttagcattttttgtagagtaaagttagtaacacatcagtggcccaatagcatggcaaagatgttaattcatattttaaattgagttgttaaataaaac |
11535573 |
T |
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| Q |
308 |
attttaattgatccttaagaaaataacattttaattgagtaaacaatcattttggtttattaacatgtgagatgatgtcaaaatagtttttaaatctatc |
407 |
Q |
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| T |
11535574 |
attttaattgatccataaaaaaataacattttaattgagtaaacaatcattttggtttattaacatgtgagatgatgtcaaaatagtttttaaatctatc |
11535673 |
T |
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| Q |
408 |
gaaattacaaacaaatttttaaggatcatgttaacaagtgtccaaaatgtacatgataaggtcaacaacatcgtaaccagaattctagctcaatatacaa |
507 |
Q |
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| T |
11535674 |
gaaattacaaacaaatttttaaaggtcatgttaacaagtgtccaaaatgtatatgataaggtcaacaacatcgtaacaagaattctagctcaatatacaa |
11535773 |
T |
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| Q |
508 |
aaatatccaaatcatttggtcaaacaccgaaaccgcaactctcttacataataattgttccacatccat----gaaatcttgcattttaaattgtgtta |
602 |
Q |
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| T |
11535774 |
aaatatccaaatcgtttgatcaaacaccgaaaccgcaactctcttacttaataattgttccacatccatgaaagaaatcttgcattttaaattgtgtta |
11535872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 264 - 554
Target Start/End: Original strand, 11524427 - 11524716
Alignment:
| Q |
264 |
caaagatgttcattcatattttaaattgagttgttaaataaaacattttaattgatccttaagaaaataacattttaattgagtaaacaatcattttggt |
363 |
Q |
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| T |
11524427 |
caaagatgttaattcatattttaaattgagttgttaaataaaacattttaattgatccttaaaaaaacaacattttaattgagtaaacaatcattttggt |
11524526 |
T |
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| Q |
364 |
ttattaacatgtgagatgatgtcaaaatagtttttaaatctatcgaaattacaaacaaatttttaaggatcatgttaacaagtgtccaaaatgtacatga |
463 |
Q |
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| T |
11524527 |
ttattaacatgtgagatgatgtcaaaatagtttttaaatctatcg-aattacaaacaaatttttaaaggttatgttaacaagtgtccaaaatatacatga |
11524625 |
T |
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| Q |
464 |
taaggtcaacaacatcgtaaccagaattctagctcaatatacaaaaatatccaaatcatttggtcaaacaccgaaaccgcaactctcttac |
554 |
Q |
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| T |
11524626 |
taaggttaaaaacatcgtaaccagaattctaactcaatatataaaaatatccaaatcgtttggtcaaacaccgaaaccgcaactctcttac |
11524716 |
T |
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