View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4747-Insertion-4 (Length: 589)
Name: NF4747-Insertion-4
Description: NF4747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4747-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 268 - 570
Target Start/End: Complemental strand, 48533500 - 48533175
Alignment:
| Q |
268 |
accttcattattctgatcgcaatgtgacaattgcggtatcttctttagcaatttgctt---------------------ctttagcctcgcaagagacct |
346 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
48533500 |
acctacattattctgatcgcaatgtgacaattgcggtatattctttagcaatttgcttctttgcaagtggcgccttcttctttagcctcgcaagagacct |
48533401 |
T |
|
| Q |
347 |
ctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgtggta |
446 |
Q |
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| T |
48533400 |
ctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgtggta |
48533301 |
T |
|
| Q |
447 |
tcttacatcatcaactccgcagca----ccagcctagcctagttctgttgttgttctttaggctgtttctaaaagcattctagtatagtatatg-ttttg |
541 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48533300 |
tctta---catcaactccgcagcaccagccagcctagcctagttctgttgttgttctttaggctgtttctaaaagcattctagtatagtatatgtttttg |
48533204 |
T |
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| Q |
542 |
ttattgttggtttagttcatggaacaaac |
570 |
Q |
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| T |
48533203 |
ttattgttggtttggttcatggaacaaac |
48533175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 48533752 - 48533648
Alignment:
| Q |
35 |
acaagtttactctagagttgccggatccggcgaccgctgtcgctgcagattcgacggaagcgccgagcatcaatgtcgaggagtcggcggatctagagtg |
134 |
Q |
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| T |
48533752 |
acaagtttactctagagttgccagatccggcgaccgctgtcgctgcagattcgacggaagcgccgagcatcaatgtcgaggagtcggcggatctagagtg |
48533653 |
T |
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| Q |
135 |
agtga |
139 |
Q |
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||||| |
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| T |
48533652 |
agtga |
48533648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 48536751 - 48536647
Alignment:
| Q |
12 |
gactatcaatattaaaattgaacacaagtttactctagagttgccggatccggcgaccgctgtcgctgcagattcgacggaagcgccgagcatcaatgtc |
111 |
Q |
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|||||||||||| ||| |||||||||||||||| |||||||| |||||| || ||||| ||||||||||||||||||| |||||||||||||| |||| |
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| T |
48536751 |
gactatcaatatcaaagttgaacacaagtttacggtagagttggcggatctggtgaccgttgtcgctgcagattcgacgaaagcgccgagcatcgatgtt |
48536652 |
T |
|
| Q |
112 |
gagga |
116 |
Q |
| |
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||||| |
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| T |
48536651 |
gagga |
48536647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 174 - 270
Target Start/End: Complemental strand, 48533613 - 48533527
Alignment:
| Q |
174 |
gatggatatgcatgctcttattgcttcttcttcatttcatttcatttcatttcagggcttacgtcgattactactttgttgcggttattacggcacc |
270 |
Q |
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| T |
48533613 |
gatggatatgcatgctcttattgcttcttcttcatttcatttca----------gggcttacgtcgattactactttgttgcggttattatggcacc |
48533527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 343 - 455
Target Start/End: Complemental strand, 48536336 - 48536225
Alignment:
| Q |
343 |
acctctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgt |
442 |
Q |
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|||||||||||| ||||||||||||||||| || ||||| ||| || | ||||||| | |||||||||||||||||||||||| |||||||||| ||| |
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| T |
48536336 |
acctctctcacatagatcagatcaacactcgtagattccgggtcctcaggctattggg-tatcttacatctctatgtggcttatgtttattattcactgt |
48536238 |
T |
|
| Q |
443 |
ggtatcttacatc |
455 |
Q |
| |
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|||| |||||||| |
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| T |
48536237 |
ggtaacttacatc |
48536225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 570
Target Start/End: Complemental strand, 48536193 - 48536082
Alignment:
| Q |
466 |
cagcaccagcctagcctagttctgttgtt-----gttcttt-----aggctgtttctaaaagcattctagtatagtatatgttttgttattgttggttta |
555 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||| ||||| ||||||||||||| || |
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| T |
48536193 |
cagcaccagcctagcctagttctgttgttacgttgttctttggtttaggctgtttataaaagcattccagtatag--tatgtcttgttattgttgg-ttg |
48536097 |
T |
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| Q |
556 |
gttcatggaacaaac |
570 |
Q |
| |
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||||||||||||||| |
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| T |
48536096 |
gttcatggaacaaac |
48536082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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