View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4747-Insertion-5 (Length: 459)
Name: NF4747-Insertion-5
Description: NF4747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4747-Insertion-5 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 180 - 459
Target Start/End: Complemental strand, 30299469 - 30299190
Alignment:
| Q |
180 |
attgttgcataaaaaacttgcttaaaatttatttattaatcaaagttatttattagtttgtgcaaaacaaacttgaagagacatgtatataaaatagttt |
279 |
Q |
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| T |
30299469 |
attgttgcataaaaaacttgcttaaaatttatttattaatcaaagttatttattagtttgtgcaaaacaaacttgaagagacatgtatataaaatagttt |
30299370 |
T |
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| Q |
280 |
acctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcgctaacgacagttggatgacctgccgga |
379 |
Q |
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| T |
30299369 |
acctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcgctaacgacagttggatgacctgccgga |
30299270 |
T |
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| Q |
380 |
attacatacacatcacctggagacaacctagctctgtacctttgcacttgttggcttctctcttcttcttgttgttcatc |
459 |
Q |
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| T |
30299269 |
attacatacacatcacctggagacaacctagctctgtacctttgcacttgttggcttctctcttcttcttgttgttcatc |
30299190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 279 - 452
Target Start/End: Complemental strand, 30291946 - 30291773
Alignment:
| Q |
279 |
tacctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcgctaacgacagttggatgacctgccgg |
378 |
Q |
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|||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| |||||| |||||| || |
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| T |
30291946 |
taccagcaaggaagctcctctggttgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctgg |
30291847 |
T |
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| Q |
379 |
aattacatacacatcacctggagacaacctagctctgtacctttgcacttgttggcttctctcttcttcttgtt |
452 |
Q |
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| T |
30291846 |
aattacataaacatcacctggagtcaacctagccctgtacctttgcacttgttggcttctctcttcttcttgtt |
30291773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 279 - 452
Target Start/End: Complemental strand, 30304580 - 30304407
Alignment:
| Q |
279 |
tacctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcgctaacgacagttggatgacctgccgg |
378 |
Q |
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|||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| |||||| |||||| || |
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| T |
30304580 |
taccagcaaggaagctcctctggttgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctgg |
30304481 |
T |
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| Q |
379 |
aattacatacacatcacctggagacaacctagctctgtacctttgcacttgttggcttctctcttcttcttgtt |
452 |
Q |
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| T |
30304480 |
aattacataaacatcacctggagtcaacctagccctgtacctttgcacttgttggcttctctcttcttcttgtt |
30304407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 279 - 459
Target Start/End: Complemental strand, 30315493 - 30315316
Alignment:
| Q |
279 |
tacctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcgctaacgacagttggatgacctgccgg |
378 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| || |
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| T |
30315493 |
taccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcctttacgacaattggatgacctgcggg |
30315394 |
T |
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| Q |
379 |
aattacatacacatcacctggagacaacctagctctgtacctttgcacttgttggcttctctcttcttcttgttgttcatc |
459 |
Q |
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| T |
30315393 |
aattacataaacatcacctggagacaacctagccctatacctttgtacttgttggcttct---ttcttgttgttgttcatc |
30315316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 279 - 459
Target Start/End: Complemental strand, 30286912 - 30286735
Alignment:
| Q |
279 |
tacctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcgctaacgacagttggatgacctgccgg |
378 |
Q |
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|||| |||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||| |
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| T |
30286912 |
taccagcaaggaagttcctttgattgttctccgcattgataccaaatccaagcaaagagagatccgaagaagcagttacgacaattggatgacctgccgg |
30286813 |
T |
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| Q |
379 |
aattacatacacatcacctggagacaacctagctctgtacctttgcacttgttggcttctctcttcttcttgttgttcatc |
459 |
Q |
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| T |
30286812 |
aattacataaacatcacctggagacaacctagccctatacctttgtacttgttggcttct---ttcttgttgttgttcatc |
30286735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 30299663 - 30299583
Alignment:
| Q |
14 |
gtgttttgccgggatcaaacattgatcctctcccacaaacttatcgctgcttaatttagttttggttttgatatatatata |
94 |
Q |
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| T |
30299663 |
gtgttttgccgggatcaaacattgatcctctcccacaaacttatcgctgcttaatttagttttggttttgatatatatata |
30299583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 428
Target Start/End: Complemental strand, 46810337 - 46810182
Alignment:
| Q |
273 |
atagtttacctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcgctaacgacagttggatgacc |
372 |
Q |
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||||| |||||||||| ||||| |||| ||||||||||||||||||||||| ||||| ||| ||||| ||||||||| | | | | ||| ||||| |
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| T |
46810337 |
atagtatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaaggaaattgagattcgaggaagcatttatggctactgggtgacc |
46810238 |
T |
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| Q |
373 |
tgccggaattacatacacatcacctggagacaacctagctctgtacctttgcactt |
428 |
Q |
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||||||||||| | || || |||||||||| |||||| ||||||| ||||||| |
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| T |
46810237 |
tgccggaattataacaacgtcgcctggagacagcctagcgttgtacctctgcactt |
46810182 |
T |
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