View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4747_high_1 (Length: 357)

Name: NF4747_high_1
Description: NF4747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4747_high_1
NF4747_high_1
[»] chr1 (4 HSPs)
chr1 (8-339)||(36525933-36526267)
chr1 (291-339)||(37923557-37923605)
chr1 (180-235)||(36533354-36533409)
chr1 (166-243)||(36553513-36553590)
[»] chr5 (3 HSPs)
chr5 (258-339)||(23270156-23270237)
chr5 (258-315)||(4431107-4431164)
chr5 (258-327)||(26917497-26917566)
[»] chr8 (1 HSPs)
chr8 (267-339)||(29468266-29468338)
[»] chr7 (1 HSPs)
chr7 (263-327)||(29443854-29443918)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 36525933 - 36526267
Alignment:
Q  8 atttatattatttagggactaattatatttacataatttagacttcaaattgaagtgtaagtgatagtttacggactacatcgatggtttattcttcgtt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  36525933 atttatattatttagggactaattatatttacataatttagacttcaaattgaagtgtaggtgatagtttacagactacatcgatggtttattcttcgtt 36526032  T
Q  108 ttccccacgatgctattgttactatctatattactaccgtatagagagagcaatataaaaatactggataacataaaacagatagccccccaaagtggca 207  Q
    |||||  | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36526033 ttccctgcaatgctattgttactatctatattactatcgtatagagagagcaatataaaaatactggaaaacataaaacagatagccccccaaagtggca 36526132  T
Q  208 tatgcattgcgacgttaatgaatgtgacatgagaatgatag---nnnnnnnnngacagaaacaaacttaactcatttcatttctaatagtagttgtaata 304  Q
    ||||||||||||||||| |||||||||||||||||||||||            |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  36526133 tatgcattgcgacgttagtgaatgtgacatgagaatgatagtttttttttttggacagaaacaaatttaactcatttcatttctaatggtagttgtaata 36526232  T
Q  305 caagatggcatataatcatgaactcgggaactagc 339  Q
    ||||||| |||||||||||||||||||||||||||    
T  36526233 caagatgacatataatcatgaactcgggaactagc 36526267  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 37923557 - 37923605
Alignment:
Q  291 tagtagttgtaatacaagatggcatataatcatgaactcgggaactagc 339  Q
    |||||||| |||||||||||||||||||||||||| || ||||||||||    
T  37923557 tagtagttttaatacaagatggcatataatcatgatcttgggaactagc 37923605  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 36533354 - 36533409
Alignment:
Q  180 ataaaacagatagccccccaaagtggcatatgcattgcgacgttaatgaatgtgac 235  Q
    ||||||||||||| ||||| ||||||||| | |||||| |||||| ||||||||||    
T  36533354 ataaaacagataggcccccgaagtggcatctacattgcaacgttagtgaatgtgac 36533409  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 36553513 - 36553590
Alignment:
Q  166 aaatactggataacataaaacagatagccccccaaagtggcatatgcattgcgacgttaatgaatgtgacatgagaat 243  Q
    ||||| |||| || |||||||| |||| ||||||||||||||| ||||||| ||| ||| || || |||| |||||||    
T  36553513 aaatattggacaatataaaacaaataggcccccaaagtggcatttgcattgtgacattagtggatatgacttgagaat 36553590  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 23270237 - 23270156
Alignment:
Q  258 gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagc 339  Q
    |||||||||||| |||| |||||||| |  |||||| | |||||||||||||||||||||||||||||||| ||||||||||    
T  23270237 gacagaaacaaagttaattcatttcactattaatagcatttgtaatacaagatggcatataatcatgaacttgggaactagc 23270156  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 4431164 - 4431107
Alignment:
Q  258 gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcat 315  Q
    |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  4431164 gacagaaacaaacttaactcatttcaattctaataataattgtaatacaagatggcat 4431107  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 26917566 - 26917497
Alignment:
Q  258 gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaac 327  Q
    |||| |||||||||||||||||||||||  |||||  |||   ||| ||||||||||||| |||||||||    
T  26917566 gacaaaaacaaacttaactcatttcattaataataacagtctcaatgcaagatggcatatgatcatgaac 26917497  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 29468266 - 29468338
Alignment:
Q  267 aaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagc 339  Q
    ||||| |||||||||||||  |||||||||||||||||||||||| ||| |||||||||||| | ||||||||    
T  29468266 aaactcaactcatttcattaataatagtagttgtaatacaagatgacatgtaatcatgaacttgagaactagc 29468338  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 29443918 - 29443854
Alignment:
Q  263 aaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaac 327  Q
    ||||||||| |||||||||||||  ||| |||| | ||||||||| ||| |||||||||||||||    
T  29443918 aaacaaactcaactcatttcattaataacagtaatcgtaatacaatatgacatataatcatgaac 29443854  T

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