View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4747_low_4 (Length: 333)
Name: NF4747_low_4
Description: NF4747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4747_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 36525956 - 36525635
Alignment:
| Q |
1 |
aattagtccctaaataatataaatatgtcaatttagtctctgctattaagatattaaagactataagggacgaagttaggcactgattattatatttata |
100 |
Q |
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| T |
36525956 |
aattagtccctaaataatataaatatgtcaatttagtctttgctattaagatattaaagactataagggacgaagttaggcactgattattatatttata |
36525857 |
T |
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| Q |
101 |
gagttaagagactgaataggagaaatggtaatagtttagggactaaattgataatttatttgaaaaatgaacttgggaaaggtacgaaggcaatccacca |
200 |
Q |
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| T |
36525856 |
gagtttagagattgaataggagaaatggtaatagtttagggactaaattgataatttatttgaaaaatgaacttgggaaaggtacgaaggcaatccacca |
36525757 |
T |
|
| Q |
201 |
cactactgcaaatcgacaaattatagtacttaaaaacaattaaggaacgtcaagccacagtacaggattaaaagttagtnnnnnnnnncacgagactagg |
300 |
Q |
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| T |
36525756 |
cactactgcaaatcgacaaattatagtacttaaaaacaattaaggaacgtcaagccacagtacaggattaaaagttggt-aaaaaaaacacgagactagg |
36525658 |
T |
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| Q |
301 |
atatgttctattttacacaggtt |
323 |
Q |
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| T |
36525657 |
atatgttctattttacacaggtt |
36525635 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 22559574 - 22559536
Alignment:
| Q |
27 |
gtcaatttagtctctgctattaagatattaaagactata |
65 |
Q |
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| T |
22559574 |
gtcaatttagtctctgctattaagatgttagagactata |
22559536 |
T |
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