View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4748-Insertion-11 (Length: 542)
Name: NF4748-Insertion-11
Description: NF4748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4748-Insertion-11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 542
Target Start/End: Original strand, 20479073 - 20479609
Alignment:
| Q |
8 |
ccaatattcaaataatattcatatcttgcttttgaagcaccgttgttcctcctgacatatattttggcaaattgtttgttggagacaacaatatggtcaa |
107 |
Q |
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| T |
20479073 |
ccaatattgaaaaaatattcatatcttgcttttgaagcaccgttgttcctcctgacatatattttggcaaattgtttgttggagacaacaatatggtcaa |
20479172 |
T |
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| Q |
108 |
ctaatcctggttccaaaagcttattcctaaactcctcaaagctaacctccttcttcctcttgaaaagatgaaaataaaggtatgaaactatcagtgacaa |
207 |
Q |
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| T |
20479173 |
ctaatcctggttccaaaagcttattcctaaactcctcaaagctaacctccttcttcctcttgaaaagatgaaaataaaggtatgaaactatcagtgacaa |
20479272 |
T |
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| Q |
208 |
caatcgaatgccgaattcaaattgattccgctttcgttcttgacccttctttccattcnnnnnnnnncttgaatgcttcttgaaaacttcctaccaacac |
307 |
Q |
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| T |
20479273 |
caatcgaatgccgaattcaaattgattccgctttcgttcttgacccttctttccattc-ttttttttcttgaatgcttcttgaaaacttcctacaaacac |
20479371 |
T |
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| Q |
308 |
catcttcatcctctgtgctagagtttgacc---cttcttttgagtcgnnnnnnncttcttatgatttcccattatgtgtgatgcgattgcgagagtggaa |
404 |
Q |
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| T |
20479372 |
catcttcatcctctgtgctagactttgacccttcttcttttgagtcgtttttttcttcttatgatttcccattatgtgcgatgcgattgcgagagtggaa |
20479471 |
T |
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| Q |
405 |
ctatggaaggaagagaagatcgctagctagggttttgagagttatctatcttgttttatgctaaataagggtttcgtttccaatttatatcttcggttgt |
504 |
Q |
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| T |
20479472 |
ctatggaaagaagagaagatcgctagctagggttttgagagttatctatcttgttttatgctaaataagggtttcgtttccaatttatatcttcggttgt |
20479571 |
T |
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| Q |
505 |
agcaaaccctaacttcaattccaataaactatttttca |
542 |
Q |
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| T |
20479572 |
agcaaaccctaccttcaattccaataaactatttttca |
20479609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 29727668 - 29727565
Alignment:
| Q |
60 |
tgacatatattttggcaaattgtttgttggagacaacaatatggtcaactaatcctggttccaaaagcttattcctaaactcctcaaagctaacctcctt |
159 |
Q |
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| T |
29727668 |
tgacatatattttggcaaattctttgttggagacaacaatatggtctactaagccaggttccaaaaccttaatcttaaactcctgaaagctaatctcctg |
29727569 |
T |
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| Q |
160 |
cttc |
163 |
Q |
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|||| |
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| T |
29727568 |
cttc |
29727565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 38514942 - 38515005
Alignment:
| Q |
89 |
gagacaacaatatggtcaactaatcctggttccaaaagcttattcctaaactcctcaaagctaa |
152 |
Q |
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| T |
38514942 |
gagacaacaatatgatctaccaatcctggttccaaaagcttattcacaaactcctgaaagctaa |
38515005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 24003133 - 24003047
Alignment:
| Q |
57 |
tcctgacatatattttggcaaattgtttgttggagacaacaatatggtcaactaatcctggttccaaaagcttattcctaaactcct |
143 |
Q |
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| T |
24003133 |
tcctcacatatattttggcaactgatttgttggagacaacaatatggtctactaatcctggttccaaaagcttatttttaaactcct |
24003047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 16837241 - 16837143
Alignment:
| Q |
60 |
tgacatatattttggcaaattgtttgttggagacaacaatatggtcaactaatcctggttccaaaagcttattcctaaactcctcaaagctaacctcct |
158 |
Q |
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| T |
16837241 |
tgacatatattttggcaagttctttgttagagacaacaatatggtctactaagccaggttccaaaaccttaatcttaaactcctgaaagctaatctcct |
16837143 |
T |
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