View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4748-Insertion-13 (Length: 336)
Name: NF4748-Insertion-13
Description: NF4748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4748-Insertion-13 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 109 - 336
Target Start/End: Original strand, 33804482 - 33804709
Alignment:
| Q |
109 |
ttttgtcacaatgcatcccctcgcgttactttttaatatctacctacatttatttctctggcgattttaggagagaaaatatattgttcacttatcacct |
208 |
Q |
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| T |
33804482 |
ttttgtcacaatgcatcccctcgcgttaccttttaatctctacctacatttatttctctagcgattttaggagagaaaatatattgttcacttatcacct |
33804581 |
T |
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| Q |
209 |
tctaaaagttttcttcacaattagcttttcttcaccaaccacaccaccgacatggccaaaaacaccacctccacctctaatcatgtcctgattccatagc |
308 |
Q |
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| T |
33804582 |
tctaaaagttttcttcacaattagcttttcttcaccaaccacaccaccgacatggccaaaaacaccacctccacctctaatcatgtcctgattccatagc |
33804681 |
T |
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| Q |
309 |
cttgcctatatcaagaccccttgaaacc |
336 |
Q |
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| T |
33804682 |
cttgcctatatcaagaccccctgaaacc |
33804709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 33733101 - 33733240
Alignment:
| Q |
109 |
ttttgtcacaatgcatcccctcgcgttactttttaatatctacctacatttatttctctggcgattttaggagagaaaatatattgttcacttatcacct |
208 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33733101 |
ttttgtcacaatgcatcccctcgcgttaccttttaatctctacctacatttatttctctggcgattttaggagagaaaatatattgttcacttatcacct |
33733200 |
T |
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| Q |
209 |
tctaaaagttttcttcacaattagcttttcttcaccaacc |
248 |
Q |
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| T |
33733201 |
tctaaaagttttcttcataattagcttttcttcaccaacc |
33733240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 33804325 - 33804476
Alignment:
| Q |
8 |
ctatcgatgccgatatattattttttatttatgtctaannnnnnnnnnatagaaattcaactttatggaaacaaccgtaaatggttgactgttgactagt |
107 |
Q |
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| T |
33804325 |
ctatcgatgccgatatattatttttaatttatgtctaaatttttt---atagaaattcaactttatggaaacgaccgtaaatggttgactgttgactagt |
33804421 |
T |
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| Q |
108 |
attttgtcacaatgcatcccctcgcgttactttttaatatctacctacatttatt |
162 |
Q |
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| T |
33804422 |
attttgtcacaatgcatcctctcgcgttactttttaatatctacctacatttatt |
33804476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 33732948 - 33733095
Alignment:
| Q |
12 |
cgatgccgatatattattttttatttatgtctaannnnnnnnnnatagaaattcaactttatggaaacaaccgtaaatggttgactgttgactagtattt |
111 |
Q |
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| T |
33732948 |
cgatgccgatatattatttttaatttatgtctaaatttttt---atagaaattcaactttatggaaacgaccgtaaatggttgactgttgactagtattt |
33733044 |
T |
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| Q |
112 |
tgtcacaatgcatcccctcgcgttactttttaatatctacctacatttatt |
162 |
Q |
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| T |
33733045 |
tgtcacaatgcatcctctcgcgatactttttaatatctacctacatttatt |
33733095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 6144167 - 6144126
Alignment:
| Q |
88 |
atggttgactgttgactagtattttgtcacaatgcatcccct |
129 |
Q |
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| T |
6144167 |
atggttgactgttgactaatattttgtcacaatgcgtcccct |
6144126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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