View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4748-Insertion-15 (Length: 286)
Name: NF4748-Insertion-15
Description: NF4748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4748-Insertion-15 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 286
Target Start/End: Complemental strand, 6968426 - 6968148
Alignment:
| Q |
8 |
ataaatatcatacttcaaaaaattagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttg |
107 |
Q |
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| T |
6968426 |
ataaatatcatacttcaaaaaattagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttg |
6968327 |
T |
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| Q |
108 |
ccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttctttttaggactcattgcaattgtttcaaacgaag |
207 |
Q |
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| T |
6968326 |
ccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttctttttaggactcattgcaattgtttcaaacgaag |
6968227 |
T |
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| Q |
208 |
acggatgttcaaatatcacatgactccacttacctcccctttcatattcaccattacctgtgcaatttgtgtaaagctt |
286 |
Q |
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| T |
6968226 |
acggatgttcaaatatcacatgactccacttacctcccctttcatattcaccattacctgtgcaatttgtgtaaagctt |
6968148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 1000546 - 1000780
Alignment:
| Q |
8 |
ataaatatcatacttcaaaaaa-ttagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggctt |
106 |
Q |
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| T |
1000546 |
ataaatatcatacttcaaaaaaattagaaatggcagtaactagtgatgattttcctgttcctggaggaccatagaacaaatagcctatcttccaaggctt |
1000645 |
T |
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| Q |
107 |
gccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttctttttaggactcattgcaattgtttcaaacgaa |
206 |
Q |
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| T |
1000646 |
accaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctatttcttc-ttttaggattcattgcaattgtttcaaa-gaa |
1000743 |
T |
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| Q |
207 |
gacggatgttcaaatatcacatgactccacttacctc |
243 |
Q |
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| T |
1000744 |
gatggatgttcaaatataacatgactccatttacctc |
1000780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 6971189 - 6971087
Alignment:
| Q |
57 |
tttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttttgcataatactctttagccttactgaatgtaacaagatcat |
156 |
Q |
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| T |
6971189 |
tttccagtccctggaggaccataaagtaaataacctcttttccaagcccttccaattcttgcatagaattcaccagctttactaaatgtaataagatcat |
6971090 |
T |
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| Q |
157 |
caa |
159 |
Q |
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||| |
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| T |
6971089 |
caa |
6971087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 1800862 - 1800792
Alignment:
| Q |
54 |
gattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttttgcataata |
124 |
Q |
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| T |
1800862 |
gatttacctgttcctggaggaccataaagtaaataaccgcgtttccaagccttaccgatttttgcataata |
1800792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 2833326 - 2833403
Alignment:
| Q |
54 |
gattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttttgcataatactcttta |
131 |
Q |
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| T |
2833326 |
gattttccagttcctggaggaccataaagtagataaccacgtttccaagcctttccaactttagcataatactcttta |
2833403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 53395547 - 53395499
Alignment:
| Q |
54 |
gattttcctgttcctggaggaccataaagcaaatagcctctcttccaag |
102 |
Q |
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| T |
53395547 |
gattttccagttcctggaggaccataaagaagataacctcttttccaag |
53395499 |
T |
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