View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4748-Insertion-2 (Length: 992)
Name: NF4748-Insertion-2
Description: NF4748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4748-Insertion-2 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 899; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 899; E-Value: 0
Query Start/End: Original strand, 7 - 992
Target Start/End: Original strand, 53104154 - 53105138
Alignment:
| Q |
7 |
atattcaccttcaggggtggcttttgtcttgctcgagcaagagaaactggcatgtccaagcctatttcctcttcctttttcatatccctcaaaatataat |
106 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
53104154 |
atattcaccttcaggagtggcttttgtcttgctcgagcaagagaaactggcatggtaaagcctatttccttttcctttttcatatccctcaaaatataat |
53104253 |
T |
|
| Q |
107 |
ttttctcatcaatcaaaaagttggcttgtccacaactctcaagccatgagtgtgtcaatactaagttcccaagagccattgcttccagcatattctttgt |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53104254 |
ttttctcatcaatcaaaaagttggcttgtccacaactctcaagccatgagtgtgtcaatactaagttaccaagagccattgcttccagcatattctttgt |
53104353 |
T |
|
| Q |
207 |
acgtgtaaacttgtctgttatgaaatgagtggcttccactgagtttgatgcagtagatatattaagacgcgccaagatctgcaaggaggatagaacaaca |
306 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53104354 |
atgtgtaaacttgtctgttatgaaatgagtggcttccactgagtttgatgcagtagatatattaagacgcgccaagatctgcaaggaggatagaacaaca |
53104453 |
T |
|
| Q |
307 |
tcactagtcgataatcacaacatttagcatctcctagactcctatcataaacataaaagcaataatttaccttctgttgttgcttgaggacattgccatc |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53104454 |
tcactagtcgataatcacaacatttagcatctcctagactcctatcataaacataaaagcaataatttaccttctgttgttgcttgaggacattgccatc |
53104553 |
T |
|
| Q |
407 |
caaatgttgactaaacagaactcgaacatttgtcatatctcttcgatgtctcaaatctttattcatcatttctaatgtggatttgggaagacctaatctg |
506 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53104554 |
caactgttgactaaacagaactcgaacatttgtcatatctcttcgatgtctcaaatctttattcatcatttctaatgtggatttgggaacacctaatctg |
53104653 |
T |
|
| Q |
507 |
ctaagttccttcaacagtgaagactttggcaggtttttctcacatgcttttttgcggtgcttattgcatgtatggttagcatttgaaatttttatgcctt |
606 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53104654 |
ctaagttccttcaaaagtgaagactttggcaggtttttctcacatgcttttttgcggtgcttattgcatgtatggttagcatttgaaatttttatgcctt |
53104753 |
T |
|
| Q |
607 |
cacttggagcaactgaagcagaaatttctgaactcgattgtacaacactcttgtttgataatatttcaacatgctccagcaacaagggacgaatatcatg |
706 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
53104754 |
cacttggagcaactgaagcagaaatttctgaactcgattgtacaacactcttgtttgataatatttcaacatgttccagcaacaagggacgcatatcatg |
53104853 |
T |
|
| Q |
707 |
cagtgtttcaaattttatagcatgaccagctgaaactgggagaagacaagatttacgcacaacatttcggccctctggacttctagtggaatagacattg |
806 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53104854 |
cagtgtttcaaattttatagcatcaccagctgaaactgggagaagacaagatttacgcacagcatttcggccctctggacttctagtggaatagacattg |
53104953 |
T |
|
| Q |
807 |
ttttctttatcatcaatacacaaaactcttgggggcattagctcgctttcttttacctcttggtcctttcgggataagccc-agaatcaacctttgaaaa |
905 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
53104954 |
ttttctttatcatcaatacacaaaactctt-ggggcattagcttgctttcttttccctcttggtcctttc-ggataagcccaagaatcaacctttgaaaa |
53105051 |
T |
|
| Q |
906 |
actgctggtaactgatatatgtggactaacttcaacctggtggttcaaactgctcttcctagccacgccatatgagctagtagataa |
992 |
Q |
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| T |
53105052 |
actgctggtaactgatatatgtggactaacttcaacctggtggttcaaactgctcttcctagccacgccatatgagctagtagataa |
53105138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 748; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 13 - 992
Target Start/End: Original strand, 43916875 - 43917845
Alignment:
| Q |
13 |
accttcaggggtggcttttgtcttgctcgagcaagagaaactggcatgtccaagcctatttcctcttcctttttcatatccctcaaaatataatttttct |
112 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43916875 |
accttcaggagtggcttttgtcttgctcgagcaagagaaactggcatgctaaagcctatttccttttcctttttcatatccctcaaaatataatttttct |
43916974 |
T |
|
| Q |
113 |
catcaatcaaaaagttggcttgtccacaactctcaagccatgagtgtgtcaatactaagttcccaagagccattgcttccagcatattctttgtacgtgt |
212 |
Q |
| |
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| T |
43916975 |
catcaatcaaaaagttggcttgtccacaactctcaagccatgagtgtgtcaatactaagttaccaagagccattgcttccagcatattctttgtacgtgt |
43917074 |
T |
|
| Q |
213 |
aaacttgtctgttatgaaatgagtggcttccactgagtttgatgcagtagatatattaagacgcgccaagatctgcaaggaggatagaacaacatcacta |
312 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43917075 |
aaacttgtctgctatgaaatgagtggcttccattgagcttgatgcagtagatatattaagacgcgccaagatctgcaaggaggataaaacaacatcacta |
43917174 |
T |
|
| Q |
313 |
gtcgataatcacaacatttagcatctcctagactcctatcataaacataaaagcaataatttaccttctgttgttgcttgaggacattgccatccaaatg |
412 |
Q |
| |
|
|| ||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
43917175 |
gttgataatcacaacatttagcatctccaa--------tcataagcataaaagcaataatttaccttctgttgctgcttgaggacattgtcatccaaatg |
43917266 |
T |
|
| Q |
413 |
ttgactaaacagaactcgaacatttgtcatatctcttcgatgtctcaaatctttattcatcatttctaatgtggatttgggaagacctaatctgctaagt |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
43917267 |
ttgactaaacagaactcgaacatttgtcatatctcttcgatgtctcaaatctttactcatcatttctgatgtggatttgggaacacctaatctgataagt |
43917366 |
T |
|
| Q |
513 |
tccttcaacagtgaagactttggcaggtttttctcacatgcttttttgcggtgcttattgcatgtatggttagcatttgaaatttttatgccttcacttg |
612 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
43917367 |
tccttcaaaagtgaagactttggcaggtttttctcacatgcttttttgcggtgctcattgcatgtgtggttagcatttgaaatttttatgccttcacttg |
43917466 |
T |
|
| Q |
613 |
gagcaactgaagcagaaatttctgaactcgattgtacaacactcttgtttgataatatttcaacatgctccagcaacaagggacgaatatcatgcagtgt |
712 |
Q |
| |
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|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| | |
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|
| T |
43917467 |
gaccaactgaagcggaaatttctgaactcgattgtacaacactcttgtttgataatatttcaacatgtgccagcaacaagggacgcatatcatgcaggtt |
43917566 |
T |
|
| Q |
713 |
ttcaaattttatagcatgaccagctgaaactgggagaagacaagatttacgcacaacatttcggccctctggacttctagtggaatagacattgttttct |
812 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
43917567 |
ttcaaattttatagcatcaccagctgaaactgggagaagacgagatttacgcacagcatttcggccctctaaacttctagtggaatagacattgttttct |
43917666 |
T |
|
| Q |
813 |
ttatcatcaatacacaaaactcttgggggcattagctcgctttcttttacctcttggtcctttcgggataagccc-agaatcaacctttgaaaaactgct |
911 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||||||||| |
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|
| T |
43917667 |
ttatcatcaatacccaaaactctt-ggggcattagctcgctttcttttacctcttggtccttt-tggacaagcccaagaatcaatctttgaaaaactgct |
43917764 |
T |
|
| Q |
912 |
ggtaactgatatatgtggactaacttcaacctggtggttcaaactgctcttcctagccacgccatatgagctagtagataa |
992 |
Q |
| |
|
||||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
43917765 |
tgtaactgatatctgcggactaaattcaatctggtggttcaaactgctcttcctagccactccatatgaggtagtagataa |
43917845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 6804996 - 6804908
Alignment:
| Q |
73 |
tcctcttcctttttcatatccctcaaaatataatttttctcatcaatcaaaaagttggcttgtccacaactctcaagccatgagtgtgt |
161 |
Q |
| |
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|||| ||||||||| ||||||||| ||||||||||||||||| || ||| |||| ||||||||||| ||||||| ||| ||||||| |
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| T |
6804996 |
tccttttcctttttggcatccctcaatatataatttttctcatccataaaacagttagcttgtccacagctctcaatccacaagtgtgt |
6804908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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