View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4748-Insertion-3 (Length: 923)
Name: NF4748-Insertion-3
Description: NF4748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4748-Insertion-3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 885; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 885; E-Value: 0
Query Start/End: Original strand, 8 - 923
Target Start/End: Complemental strand, 37664125 - 37663210
Alignment:
| Q |
8 |
aaagtgtgttttaaagggagaagaaaatggcaactctagtcgatattggcgtttctgctggcatcaatctgttttccgcaactatgttccttttagcgtt |
107 |
Q |
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| T |
37664125 |
aaagtgtgttttaaagggagaagaaaatggcaactctagtcgatattggcgtttctgctggcatcaatctgttttccgcaactatgttccttttagcgtt |
37664026 |
T |
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| Q |
108 |
tgcagtgttgcgacttcagcctttcaatgatagggtttacttcccaaaatggtatctgaaggggataagaagcagcccaacaaattccagatcaattgtc |
207 |
Q |
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| T |
37664025 |
tgcagtgttgcgacttcagcctttcaatgatagggtttacttcccaaaatggtatctgaaggggataagaagcagcccaacaaattccagatcaattgtc |
37663926 |
T |
|
| Q |
208 |
aagaaatttgttaaccttgactttggaacctacattaggttcctcaattggatgcctgcagcattgcatatgcctgaacctgagcttattgatcatgcag |
307 |
Q |
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| T |
37663925 |
aagaaatttgttaaccttgactttggaacctacattaggttcctcaattggatgcctgcagcattgcatatgcctgaacctgagcttattgatcatgcag |
37663826 |
T |
|
| Q |
308 |
gccttgactctgccgtctttattcgtatttatattcttgggttagttaacgtgcacccagtttccatttaatggcttaaattattgtcaagatttgagtg |
407 |
Q |
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| T |
37663825 |
gccttgactctgccgtctttattcgtatttatattcttgggttagttaacgtgcacccagtttccatttaatggcttaaattattgtcaagatttgagtg |
37663726 |
T |
|
| Q |
408 |
ttcgcaactgcagtttgaaaactttctgttttctaatatttagttattttgtttttctgatgggaatactcatgtacagcgtcaaaatatttgccccaac |
507 |
Q |
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| T |
37663725 |
ttcgcaactgcagtttgaaaactttctgttttctaatatttagttattttgtttttctgatgggaatactcatgtacagtgtcaaaatatttgccccaac |
37663626 |
T |
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| Q |
508 |
taccctactggcttttatggttttggttcctattaactggactggaaaaactttggaagcaccagcagccaagggtctgacatttagcgatattgacaag |
607 |
Q |
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| T |
37663625 |
taccctactggcttttatggttttggttcccattaactggactggaaaaactttggaagcaccagcagccaagggtctgacatttagcgatattgacaag |
37663526 |
T |
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| Q |
608 |
ctttcaatatcgaacattccatttggatcaaagaggtgcgctaatccatttgacaaatttgttcaagctctatattactcccttttccctaacacaccac |
707 |
Q |
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| T |
37663525 |
ctttcaatatcgaacattccatttggatcaaaaaggtgcgctaatccatttgacaaatttgttcaagctctatattactcccttttccctaacacaccac |
37663426 |
T |
|
| Q |
708 |
aaatattattgagaattgaaggagttatatattttgctagtaaaatagtacattgtaaatttggatttttgtcttttattctagacaaaccaattaagag |
807 |
Q |
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| T |
37663425 |
aaatattattgagaattgaaggagttatatattttgctagtaaaatagtacattgtaaattt-gatttttgtcttttattctagacaaaccaattaagag |
37663327 |
T |
|
| Q |
808 |
tccgaataataactgaattgacttcttttgtcataatagag-tgtagactctttgtatcacgaatcttgatacataacctggttgcttcatactatatgt |
906 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37663326 |
tccgaataataactgaattgacttcttttgtcataatagagttgtagactcttcgtatcacgaatcttgatacataacctggttgcttcatactatatgt |
37663227 |
T |
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| Q |
907 |
tacgagtttcacatcat |
923 |
Q |
| |
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| T |
37663226 |
tacgagtttcacatcat |
37663210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 55427966 - 55427917
Alignment:
| Q |
121 |
cttcagcctttcaatgatagggtttacttcccaaaatggtatctgaaggg |
170 |
Q |
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| T |
55427966 |
cttcagcctttgaatgatagggtatacttcccaaaatggtatctcaaggg |
55427917 |
T |
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