View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4748-Insertion-6 (Length: 287)
Name: NF4748-Insertion-6
Description: NF4748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4748-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 30 - 227
Target Start/End: Original strand, 32868193 - 32868394
Alignment:
| Q |
30 |
cattcatgatattgtttactatactatcaagtacgacactttgtattttattcttctnnnnnnncaacatattagagagcaagaattacaattgagt--- |
126 |
Q |
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| T |
32868193 |
cattcatgatattgtttactatactatcaagtacgacactttgcattttattcttctaaaaaaacaacatat-agatagcaagaattacaattgagttta |
32868291 |
T |
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| Q |
127 |
--gccaatatattaatgggggcactaggtctagcccacgtattgatatgaatacatccgtccctggtgttagtgtttgaattttcatataaattttcatt |
224 |
Q |
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| T |
32868292 |
gtgccaatatattaatgggggcactaggtctagcccacgtattgatatgaatacatccgtccctggtgttagtgtttgaattttcatataaattctcttt |
32868391 |
T |
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| Q |
225 |
ttt |
227 |
Q |
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||| |
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| T |
32868392 |
ttt |
32868394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 50821258 - 50821181
Alignment:
| Q |
199 |
tttgaattttcatataaattttcatttttctactcaatatcatgtacttttttgatagatctatgtcataaaaatcaaa |
277 |
Q |
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| T |
50821258 |
tttgaattttcatagaaattctcatttatctactaaatatcatgta-ttttttaatagatttgtttcataaaaatcaaa |
50821181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 277
Target Start/End: Original strand, 50854603 - 50854680
Alignment:
| Q |
199 |
tttgaattttcatataaattttcatttttctactcaatatcatgtacttttttgatagatctatgtcataaaaatcaaa |
277 |
Q |
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| T |
50854603 |
tttgaattttcatagaaattctcatttatctactaaatatcatgta-ttttttaatagatttgtttcataaaaatcaaa |
50854680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 50821312 - 50821271
Alignment:
| Q |
190 |
gtgttagtgtttgaattttcatataaattttcatttttctac |
231 |
Q |
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||||||||||||||||||||||| ||||| |||||| ||||| |
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| T |
50821312 |
gtgttagtgtttgaattttcatagaaattctcatttatctac |
50821271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 50854549 - 50854590
Alignment:
| Q |
190 |
gtgttagtgtttgaattttcatataaattttcatttttctac |
231 |
Q |
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| T |
50854549 |
gtgttagtgtttgaattttcatagaaattctcatttatctac |
50854590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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