View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4748-Insertion-8 (Length: 847)
Name: NF4748-Insertion-8
Description: NF4748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4748-Insertion-8 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0542 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 381 - 847
Target Start/End: Complemental strand, 24125855 - 24125387
Alignment:
| Q |
381 |
atatgacacatattgtgagacggagggagtaatatcaggatgcatttgatgacagatccagatggagggacgaacttgattaacatttttcaatattaat |
480 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24125855 |
atattacacatattgtgagacggagagagtaatatcaggatgcatttgatgacagatccagatggagggacgaacttgattaacatttttcaatattaat |
24125756 |
T |
|
| Q |
481 |
gatcatttttgaatttttatagtgcgacgatcaaatcgagaaaaccctatagtttcaaggaacaacttgtgcatgcaa-tgagttatgataacttaaaaa |
579 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24125755 |
gatcatttttgaatttttataatgcgacgatcaaatcgagaaaaccctatagtttcaaggaacaacttgtgcatgcaaatgagttatgataacttaaaaa |
24125656 |
T |
|
| Q |
580 |
gttacannnnnnnactaaacacttgttattttaatcttgaaactttgttcgaggctgaaatggaccatgctattgttagccatgttctactttcgccgtg |
679 |
Q |
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|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24125655 |
gttacatttttttactaaacacttgttattttaatcttgaaactttgttcgaggctgaaatggaccatgctattgttagccatgttctactttcgccgtg |
24125556 |
T |
|
| Q |
680 |
ttcttgatagctaatgaaagcttcatttcatccttacctgctcaaacacacatggccacatcaatctcatgttctattgaaggtttgagccatggcagaa |
779 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24125555 |
ttcttgatagctaatgaaagcttcatttcatccttgcctgctcaaacacacatggccacatcaatctcatgttctattgaaggtttgagccatggcagaa |
24125456 |
T |
|
| Q |
780 |
ctaggtacaaaaata-tannnnnnnnaaaataaaaaagcaactttttgacatgtaaaatgtgtatatag |
847 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24125455 |
ctaggtacaaaaatattttttttaaaaaaataaaaaagcaactttttgacatgtaaaatgtgtatatag |
24125387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 24126160 - 24125852
Alignment:
| Q |
7 |
ataaatgtatatgtgctagtaaccatattctggcattggattttaacctgcttttgagaaacttggaatatgattggtcattgtaagtgatagaaccacc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24126160 |
ataaatgtatatgtgctagtaaccatattctggcattggattttaacctgcttttgagaaacttggaatatgattggtcattgtaagtgatagaaccacc |
24126061 |
T |
|
| Q |
107 |
aattgtgggctggcttattcttcccccaaggagatttagaagacttgtctttccacttcctgagggacccatcaatgccaaaacttcacctggatttaca |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24126060 |
aattgtgggctggcttattcttcctccaaggagatttaaaagacttgtctttccacttcctgagggacccatcaatgccaaaacttcacctggatttaca |
24125961 |
T |
|
| Q |
207 |
gaaccactgatcccatacaagatatccttctcctcacttgatgtcatgccttttagtactaccttgtaggtcacatcagtgaactgcatatattccaaaa |
306 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24125960 |
gaaccactgatcccatacaagatatccttctcctcacttgatgtcatgccttttagtactaccttgtaggtcacatcagtgaactgcatatattccaaaa |
24125861 |
T |
|
| Q |
307 |
ttaatatat |
315 |
Q |
| |
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||| ||||| |
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| T |
24125860 |
ttagtatat |
24125852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 40 - 297
Target Start/End: Complemental strand, 24144137 - 24143877
Alignment:
| Q |
40 |
cattggattttaacctgcttttgagaaacttggaatatgattggtcattgtaagtgatagaaccaccaattgtgggctggc---ttattcttcccccaag |
136 |
Q |
| |
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||||||||||| ||||||| || || |||||||||||| || ||||||||||||||||||||||||| ||||||| || ||| ||||| ||||| |
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| T |
24144137 |
cattggattttcacctgctcttaaggaacttggaatatattttgtcattgtaagtgatagaaccaccatttgtgggatgatgatttagccttcctccaag |
24144038 |
T |
|
| Q |
137 |
gagatttagaagacttgtctttccacttcctgagggacccatcaatgccaaaacttcacctggatttacagaaccactgatcccatacaagatatccttc |
236 |
Q |
| |
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||| |||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| || |||| ||||||||| ||| |
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| T |
24144037 |
gagttttaaaagagttgtctttccacttcctgatggacccatcattgccaaaacttcacctggatttacagaaccacttatgccattcaagatatctttc |
24143938 |
T |
|
| Q |
237 |
tcctcacttgatgtcatgccttttagtactaccttgtaggtcacatcagtgaactgcatat |
297 |
Q |
| |
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| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24143937 |
ttcccacttgatgtcatgcctttgagtactaccttgtaggtcacatcagtgaactgcatat |
24143877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 474
Target Start/End: Complemental strand, 30598885 - 30598830
Alignment:
| Q |
419 |
gatgcatttgatgacagatccagatggagggacgaacttgattaacatttttcaat |
474 |
Q |
| |
|
|||||||| ||| ||| || ||||| ||||||||||||||||||||||||| |||| |
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|
| T |
30598885 |
gatgcattggataacacattcagatagagggacgaacttgattaacattttgcaat |
30598830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 52 - 294
Target Start/End: Original strand, 43533223 - 43533465
Alignment:
| Q |
52 |
acctgcttttgagaaacttggaatatgattggtcattgtaagtgatagaaccaccaattgtgggctggcttattcttcccccaaggagatttagaagact |
151 |
Q |
| |
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|||||||||| || ||||||||||||| ||| ||||||||||| ||||| |||||||| | || || |||| || | ||||| ||||||| | | |
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| T |
43533223 |
acctgctttttaggaacttggaatatggttgatcattgtaagttatagagccaccaatatttggttgacttaacctagctccaagtagatttaacaaaga |
43533322 |
T |
|
| Q |
152 |
tgtctttccacttcctgagggacccatcaatgccaaaacttcacctggatttacagaaccactgatcccatacaagatatccttctcctcacttgatgtc |
251 |
Q |
| |
|
|| || |||| ||||||||||||||||||||| |||||||| |||||||||||| ||||| ||||||| | ||||||||| || || || ||| |||| |
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|
| T |
43533323 |
agttttaccacctcctgagggacccatcaatgctaaaacttcccctggatttacacaaccagtgatccctttcaagatatctttttcaacatttgttgtc |
43533422 |
T |
|
| Q |
252 |
atgccttttagtactaccttgtaggtcacatcagtgaactgca |
294 |
Q |
| |
|
|||||||| | |||| |||||| |||||||| |||||||||| |
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| T |
43533423 |
atgcctttaatcactatcttgtatgtcacatccgtgaactgca |
43533465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 361 - 412
Target Start/End: Original strand, 39213461 - 39213512
Alignment:
| Q |
361 |
aataaccgtgtaaaactcaaatatgacacatattgtgagacggagggagtaa |
412 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
39213461 |
aataaccgtgtaaaattcaaataggacacctattgtgagacggagggagtaa |
39213512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 469
Target Start/End: Original strand, 31185079 - 31185130
Alignment:
| Q |
418 |
ggatgcatttgatgacagatccagatggagggacgaacttgattaacatttt |
469 |
Q |
| |
|
||||||||||||| | ||||| ||| ||||||||||||||||||||||||| |
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|
| T |
31185079 |
ggatgcatttgataatagatcatgatagagggacgaacttgattaacatttt |
31185130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 11649720 - 11649765
Alignment:
| Q |
361 |
aataaccgtgtaaaactcaaatatgacacatattgtgagacggagg |
406 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| ||||||||||| |
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| T |
11649720 |
aataaccgtgtaaaactcaagtatgacacttattatgagacggagg |
11649765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 412
Target Start/End: Original strand, 28073587 - 28073638
Alignment:
| Q |
361 |
aataaccgtgtaaaactcaaatatgacacatattgtgagacggagggagtaa |
412 |
Q |
| |
|
||||||| |||||||||||||| |||||| || |||||||| |||||||||| |
|
|
| T |
28073587 |
aataaccatgtaaaactcaaatgtgacacctaatgtgagactgagggagtaa |
28073638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 489
Target Start/End: Complemental strand, 40258725 - 40258654
Alignment:
| Q |
418 |
ggatgcatttgatgacagatccagatggagggacgaacttgattaacatttttcaatattaatgatcatttt |
489 |
Q |
| |
|
||||||||||||| ||||||||| | | | |||||||||||||| ||||||||||| | || ||||||||| |
|
|
| T |
40258725 |
ggatgcatttgataacagatccaaacagtgcgacgaacttgattagcatttttcaatttcaaagatcatttt |
40258654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 6323332 - 6323283
Alignment:
| Q |
368 |
gtgtaaaactcaaatatgacacatattgtgagacggagggagtaatatca |
417 |
Q |
| |
|
||||||||||||||| |||||| | |||||||||||||||||| ||||| |
|
|
| T |
6323332 |
gtgtaaaactcaaatgtgacacctgatgtgagacggagggagtattatca |
6323283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0542 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0542
Description:
Target: scaffold0542; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 361 - 401
Target Start/End: Complemental strand, 11009 - 10969
Alignment:
| Q |
361 |
aataaccgtgtaaaactcaaatatgacacatattgtgagac |
401 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
11009 |
aataacagtgtaaaactcaaataagacacatattgtgagac |
10969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 30658938 - 30658888
Alignment:
| Q |
361 |
aataaccgtgtaaaactcaaatatgacacatattgtgagacggagggagta |
411 |
Q |
| |
|
|||||| |||||||||||||||| ||| | || |||||||||||||||||| |
|
|
| T |
30658938 |
aataactgtgtaaaactcaaataagacgcctactgtgagacggagggagta |
30658888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 50443105 - 50443155
Alignment:
| Q |
361 |
aataaccgtgtaaaactcaaatatgacacatattgtgagacggagggagta |
411 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
50443105 |
aataatcgtgtgaaactcaaatgggacacatattttgagacggagggagta |
50443155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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