View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4748-Insertion-9 (Length: 661)

Name: NF4748-Insertion-9
Description: NF4748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4748-Insertion-9
NF4748-Insertion-9
[»] chr8 (1 HSPs)
chr8 (7-661)||(37460166-37460816)


Alignment Details
Target: chr8 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 7 - 661
Target Start/End: Original strand, 37460166 - 37460816
Alignment:
Q  7 agaatttttgcatatgctatatcaattcctttaagttaatatttgcttctttatggttgcagttatagtaagagaaaaccaaatgaaagtatgaggctta 106  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37460166 agaatttttgcatatgctatatcaattcctttaagtaaatatttgcttctttatggttgcagttatagtaagagaaaaccaaatgaaagtatgaggctta 37460265  T
Q  107 ttgtgatatttttctttggaggatttcttggcttatttataggattatcagtcccagcattttcaacaacaaaggtgattaaatcgagtatctgatgcct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37460266 ttgtgatatttttctttggaggatttcttggcttatttataggattatcagtcccagcattttcaacaacaaaggtgattaaatcgagtatctgatgcct 37460365  T
Q  207 cagtgagtttttattcaggttttgatcttgtttgattttagaatgcaactctgactatgcttaannnnnnnnagttgaatctgccatctagcttgcttcc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  37460366 cagtgagtttttattcaggttttgatcttgtttgattttagaatgcaactctgactatgcttaattttttttagttgaatctgccatctagcttgcttcc 37460465  T
Q  307 ttccattgatttgtcatgcattcgcggtagggatacatggtctttcatgaagaatgatgatagcatctcatcaaaagatcagttactgaataatccatct 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  37460466 ttccattgatttgtcatgcattcgcggtagggatacatggtctttcatgaagaatgatgatagcatctcatcacaagatcagttactgaatagtccatct 37460565  T
Q  407 aaggtttgcatcttacaatgtcattcttaaaggnnnnnnnnnnnnnngttttatatagttgcaatgaggtccataaactcatgaaatttagattcatgta 506  Q
    |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37460566 aaggtttgcatcttacaatgtcattcttaaagg---aaaaaaaaaaagttttatatagttgcaatgaggtccataaactcatgaaatttagattcatgta 37460662  T
Q  507 ccgtatttgttgaacaaaggattagtattgcgaaaaactatagacaaatgcagttgatgcagtctcagaggtctcaaaattgatgatcttatggtcacaa 606  Q
    ||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37460663 cc-aatttgttgaacaaaggattagtattgcgaaaaattatagacaaatgcagttgatgcagtctcagaggtctcaaaattgacgatcttatggtcacaa 37460761  T
Q  607 atgagattgcgaacggcaatttaaaacgttgttttacccccattttttagctcag 661  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37460762 atgagattgcgaacggcaatttaaaacgttgttttacccccattttttagctcag 37460816  T

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