View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4748_high_1 (Length: 436)
Name: NF4748_high_1
Description: NF4748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4748_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Original strand, 49755712 - 49756122
Alignment:
| Q |
19 |
agtactggttaccggtggagctggtttcgttggaagtcatcttgttgatcgtttgattgaaagaggtgataatgtgatcgtgattgataattattttact |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49755712 |
agtactggttaccggtggagctggtttcgttggaagtcatcttgtggatcgtttgattgaaagaggtgataatgtgatcgtgattgataattattttact |
49755811 |
T |
|
| Q |
119 |
ggaaggaaagagaacgttgttcatcatcttggtaatcccaattttgaacttattagacatgatgttgttgaacctattcttcttgaagttgatcagatct |
218 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49755812 |
ggaaggaaagagaatgttgttcatcatattggtaatcccaattttgaacttattagacatgatgttgttgaacctattcttcttgaagttgatcagatct |
49755911 |
T |
|
| Q |
219 |
atcacttggcttgccctgcttcccctgttcattacaagtttaatcctgtcaagaccatcatatcctttttccaa----atttatttattatttacatatt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49755912 |
atcacttggcttgccctgcttcccctgttcattacaagtttaatcctgtcaagaccatcatatcctttttccaaatttatttatttattatttacatatt |
49756011 |
T |
|
| Q |
315 |
gcatgatcaaaatttctaatccaaagcatgttttgcacgcgacaagtacacgcgtctgacac-atatga------ttacgttctattatataatttttcc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | | |||||||||||||||||||| |
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| T |
49756012 |
gcatgatcaaaatttctaatccaaagcatgttttgcacgcgacaagtacacgcgtctgacacaatttgacacatgtgattttctattatataatttttcc |
49756111 |
T |
|
| Q |
408 |
caaattactac |
418 |
Q |
| |
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||||||||||| |
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| T |
49756112 |
caaattactac |
49756122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 80 - 289
Target Start/End: Complemental strand, 39567496 - 39567287
Alignment:
| Q |
80 |
agaggtgataatgtgatcgtgattgataattattttactggaaggaaagagaacgttgttcatcatcttggtaatcccaattttgaacttattagacatg |
179 |
Q |
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||||| |||| |||||| || ||||||||| || || || || |||||||||||| | |||||| |||||||||| | ||||| |||||| |||| | |
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| T |
39567496 |
agaggggatagtgtgattgttgttgataatttcttcaccggtagaaaagagaacgttatgcatcattttggtaatccgagatttgagcttattcgacacg |
39567397 |
T |
|
| Q |
180 |
atgttgttgaacctattcttcttgaagttgatcagatctatcacttggcttgccctgcttcccctgttcattacaagtttaatcctgtcaagaccatcat |
279 |
Q |
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| || ||||| ||| |||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||| || || ||||| || ||||| |
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| T |
39567396 |
acgtcgttgagcctcttcttcttgaagttgatcagatctatcatcttgcttgtcctgcttctcctgttcattacaagttcaaccccgtcaaaactatcat |
39567297 |
T |
|
| Q |
280 |
atcctttttc |
289 |
Q |
| |
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|||||||||| |
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|
| T |
39567296 |
atcctttttc |
39567287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 29126946 - 29127210
Alignment:
| Q |
24 |
tggttaccggtggagctggtttcgttggaagtcatcttgttgatcgtttgattgaaagaggtgataatgtgatcgtgattgataattattttactggaag |
123 |
Q |
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||||||||||||| |||||||| |||||||||||||| |||||| ||||||| ||||| || |||| || || |||||||||| ||||||||| || |
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| T |
29126946 |
tggttaccggtggtgctggttttgttggaagtcatctggttgataagttgattggtagagggaatgatgttattgttattgataatttttttactggtag |
29127045 |
T |
|
| Q |
124 |
gaaagagaacgttgttcatcatcttggtaatcccaattttgaacttattagacatgatgttgttgaacctattcttcttgaagttgatcagatctatcac |
223 |
Q |
| |
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||||||||| | |||||| |||| || || | ||||| | ||| | |||||||||||||| || ||| | ||||| ||||||||||||||||| |
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| T |
29127046 |
gaaagagaatttggttcatttgtttgggaaccctaggtttgagttaattcgtcatgatgttgttgatccgattttgcttgaggttgatcagatctatcat |
29127145 |
T |
|
| Q |
224 |
ttggcttgccctgcttcccctgttcattacaagtttaatcctgtcaagaccatcatatccttttt |
288 |
Q |
| |
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| || || |||||||| ||||||||||| |||| ||| ||| ||||||| |||||||||||||| |
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| T |
29127146 |
cttgcctgtcctgcttcacctgttcattataagtataaccctatcaagacaatcatatccttttt |
29127210 |
T |
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