View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4748_high_2 (Length: 420)
Name: NF4748_high_2
Description: NF4748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4748_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 62 - 401
Target Start/End: Original strand, 49525648 - 49525996
Alignment:
| Q |
62 |
ttgataatagtatacatgatggcatgaacaagaggaagaagaagatgaaaggagaatggataaatcagacatagaagata---------agggtgaggct |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
49525648 |
ttgataatagtatacatgatggcatgaacaagaggaagaagaagatgaaaggagaatggataaatcagacatagaaggtatagaaggtaagggtgaggct |
49525747 |
T |
|
| Q |
153 |
aaaattaggatttctcatgttaattagaacccaacataaacttaggggtgtatgtttaacctctacaaactaagttcccaagaatgtaagatgggaaata |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49525748 |
aaaattaggatttctcatgttaattagaacccaacataaacttaggggtgtatgtttaacctctacaaactaagttcccaagaatgtaagatgggaaata |
49525847 |
T |
|
| Q |
253 |
tttactcacatgtttgatatacatatacacaaaaacattctaaggaattaattatgcccagaattgtccacaagctactgtatgtacatgcgaagatatt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49525848 |
tttactcacatgtttgatatacatatacacaaaaacattctaaggaattaattatacccagaattgtccacaagccactgtatgtacatgcgaagatatt |
49525947 |
T |
|
| Q |
353 |
tccgcaggattggcacccgtactactagatggaattgaaccctgcgaaa |
401 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49525948 |
tgtgcaggattggcacccgtactactagatggaattgaaccctgcgaaa |
49525996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 45355262 - 45355348
Alignment:
| Q |
227 |
ttcccaagaatgtaagatgggaaatatttactcacatgtttgatatacatatacacaaaaacattctaaggaattaattatgcccag |
313 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| || |||||||| || |||| ||||||||| |||| ||||||| |||||| ||||| |
|
|
| T |
45355262 |
ttcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccaaggaatgaattattcccag |
45355348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 45369003 - 45369089
Alignment:
| Q |
227 |
ttcccaagaatgtaagatgggaaatatttactcacatgtttgatatacatatacacaaaaacattctaaggaattaattatgcccag |
313 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| || |||||||| || |||| ||||||||| |||| ||||||| |||||| ||||| |
|
|
| T |
45369003 |
ttcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccaaggaatgaattattcccag |
45369089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 55448041 - 55447927
Alignment:
| Q |
193 |
cttaggggtgtatgtttaacctctacaaactaagttcccaagaatgtaagatgggaaatatttactcacatgtttgatatacatatacacaaaaacattc |
292 |
Q |
| |
|
|||||||| || ||||| || |||||||| |||||| | |||||||||||| |||| |||||| || |||||||||| |||| | | ||||| || |
|
|
| T |
55448041 |
cttaggggcgtttgtttcacttctacaaaataagtttctgagaatgtaagataggaactatttattccaatgtttgatacacatgcataaaaaaaggtta |
55447942 |
T |
|
| Q |
293 |
taaggaattaattat |
307 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
55447941 |
taaggaattaattat |
55447927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 17902327 - 17902247
Alignment:
| Q |
227 |
ttcccaagaatgtaagatgggaaatatttactcacatgtttgatatacatatacacaaaaacattctaaggaattaattat |
307 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| || |||||||| || |||| ||||||||| |||| | ||||| |||||| |
|
|
| T |
17902327 |
ttcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccagggaatgaattat |
17902247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University