View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4749-Insertion-1 (Length: 1031)

Name: NF4749-Insertion-1
Description: NF4749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4749-Insertion-1
NF4749-Insertion-1
[»] chr4 (7 HSPs)
chr4 (8-1028)||(2900944-2901962)
chr4 (784-951)||(2883142-2883309)
chr4 (788-947)||(2872944-2873103)
chr4 (201-529)||(2883489-2883805)
chr4 (444-519)||(2873738-2873813)
chr4 (102-150)||(23819119-23819167)
chr4 (111-149)||(43932474-43932512)
[»] chr2 (9 HSPs)
chr2 (783-945)||(44226355-44226517)
chr2 (783-945)||(44237153-44237315)
chr2 (782-948)||(44214184-44214350)
chr2 (448-510)||(44226187-44226249)
chr2 (448-532)||(44214022-44214106)
chr2 (448-510)||(44237001-44237063)
chr2 (104-150)||(29316767-29316813)
chr2 (102-155)||(1939319-1939372)
chr2 (86-143)||(9556253-9556310)
[»] chr7 (11 HSPs)
chr7 (783-934)||(39551713-39551864)
chr7 (783-937)||(39359673-39359827)
chr7 (816-946)||(39333840-39333970)
chr7 (816-946)||(39345119-39345249)
chr7 (784-937)||(39542498-39542651)
chr7 (800-937)||(39578117-39578254)
chr7 (801-938)||(39592590-39592727)
chr7 (782-934)||(39568559-39568711)
chr7 (111-148)||(18516057-18516094)
chr7 (445-510)||(39577922-39577987)
chr7 (101-146)||(47134753-47134798)
[»] chr8 (6 HSPs)
chr8 (800-886)||(4496147-4496233)
chr8 (103-145)||(3600735-3600777)
chr8 (104-150)||(9835892-9835938)
chr8 (103-145)||(14339602-14339644)
chr8 (101-146)||(13000420-13000465)
chr8 (105-146)||(25869262-25869303)
[»] chr5 (5 HSPs)
chr5 (104-150)||(41957443-41957489)
chr5 (102-150)||(13604841-13604889)
chr5 (101-144)||(35963270-35963313)
chr5 (105-150)||(1899187-1899232)
chr5 (102-147)||(36639552-36639597)
[»] chr1 (16 HSPs)
chr1 (800-877)||(2152544-2152621)
chr1 (101-150)||(28689444-28689493)
chr1 (102-150)||(27140508-27140556)
chr1 (102-145)||(35017606-35017649)
chr1 (101-146)||(4868429-4868474)
chr1 (102-150)||(4202143-4202191)
chr1 (102-150)||(27963362-27963410)
chr1 (444-507)||(2164587-2164650)
chr1 (800-883)||(2164800-2164883)
chr1 (106-149)||(12477280-12477323)
chr1 (119-150)||(27145968-27145999)
chr1 (102-148)||(10199402-10199448)
chr1 (101-150)||(11695890-11695939)
chr1 (119-148)||(27145589-27145618)
chr1 (105-150)||(29723522-29723567)
chr1 (102-139)||(43333711-43333748)
[»] chr6 (11 HSPs)
chr6 (102-145)||(29296292-29296335)
chr6 (85-146)||(7148679-7148740)
chr6 (102-146)||(3528833-3528877)
chr6 (102-150)||(7785736-7785784)
chr6 (102-146)||(9027608-9027652)
chr6 (99-150)||(283122-283173)
chr6 (102-148)||(8420191-8420237)
chr6 (102-144)||(27909636-27909678)
chr6 (101-143)||(31583708-31583750)
chr6 (105-150)||(31624291-31624336)
chr6 (105-150)||(34939777-34939822)
[»] chr3 (9 HSPs)
chr3 (104-150)||(1217792-1217838)
chr3 (101-146)||(42745067-42745112)
chr3 (102-150)||(54180772-54180820)
chr3 (110-148)||(12923319-12923357)
chr3 (102-148)||(24785235-24785281)
chr3 (100-146)||(29771866-29771912)
chr3 (104-146)||(37273166-37273208)
chr3 (102-148)||(37825152-37825198)
chr3 (105-150)||(3467380-3467425)
[»] scaffold0003 (1 HSPs)
scaffold0003 (86-150)||(306340-306404)


Alignment Details
Target: chr4 (Bit Score: 927; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 927; E-Value: 0
Query Start/End: Original strand, 8 - 1028
Target Start/End: Original strand, 2900944 - 2901962
Alignment:
Q  8 catataagtatttatgtattaactattatttctagaacaaaagatgaaataaaggtaaactattattttgcttttccaataagctaccctaggaagctta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2900944 catataagtatttatgtattaactattatttctagaacaaaagatgaaataaaggtaaactattattttgcttttccaataagctaccataggaagctta 2901043  T
Q  108 tgtaaataagatgaaaataacttatggacatgtcataagctgtcattaaatacttatttcagtaactaaattaaaataattcaatacaaacatactctaa 207  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2901044 tgtaaataagataaaaataacttatggacatgtcataagctgtcattaaatacttatgtcagtaactaaattaaaataattcaatacaaacatactctaa 2901143  T
Q  208 ataccttgtgactttacttcatagacaatcttaaagaacttgtaaagaataagagagtctcattttggctgtgctaatacctttagtacatagtctgtta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2901144 ataccttgtgactttacttcatagacaatcttaaagaacttgtaaagaataagagagtctcgttttggctgtgctaatacctttagtacatagtctgtta 2901243  T
Q  308 ccacactttcctgttggcctccagttgcaactgcctagtatagtcaaattcaatcaaatgtacattgattaatatttatttccatggaattaatttcatt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901244 ccacactttcctgttggcctccagttgcaactgcctagtatagtcaaattcaatcaaatgtacattgattaatatttatttccatggaattaatttcatt 2901343  T
Q  408 aatctcttttttgtaacaaatattgataatagattcttcttaccttcataaagacatcaatatctgggtctggcttaatctttgcttccttttctcttct 507  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901344 attctcttttttgtaacaaatattgataatagattcttcttaccttcataaagacatcaatatctgggtctggcttaatctttgcttccttttctcttct 2901443  T
Q  508 agacaactcagacaacaagtctgtgtggatcacagaaattacttcttatacttagtgagatttgtgcgacgccaagttagaaggatactttcggaaaaaa 607  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901444 agacaactcagacaacaagtc--tgtggatcacagaaattacttcttatacttagtgagatttgtgcgacgccaagttagaaggatactttcggaaaaaa 2901541  T
Q  608 cagtttttatgcagcctggaagtatactttcgaagagnnnnnnnnnncagtccgaaagtatatttccggacacatgtgtggtttttatagaaatgtgaca 707  Q
    ||||||||||||| |||||||||||||||||||||||          | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901542 cagtttttatgcaacctggaagtatactttcgaagagttttttttttccgtccgaaagtatatttccggacacatgtgtggtttttatagaaatgtgaca 2901641  T
Q  708 taattaagaagctcgcaattagatatgagggataagttagataggnnnnnnngacaaggaatttgtgtagaaaatgactaaccataacgtgatccaacgc 807  Q
    |||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901642 taataaagaagctcgcaattagatatgagggataagttagataggaaaaaaagacaaggaatttgtgtagaaaatgactaaccataacgtgatccaacgc 2901741  T
Q  808 cttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgaggtacaaa 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901742 cttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgaggtacaaa 2901841  T
Q  908 ttcatccatcccatgtccattataagtcactctcccagatacctttagaacacaatgtcatggaatttattgtttgttaaaatgacgtaggtactcgagg 1007  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901842 ttcatccatcccatgtccattataagtcactctcccagatacctttagaacacaatgtcatggaatttattgtttgttaaaatgacgtaggtactcgagg 2901941  T
Q  1008 ggatttgaactttgtccctta 1028  Q
    |||||||||||||||||||||    
T  2901942 ggatttgaactttgtccctta 2901962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 784 - 951
Target Start/End: Complemental strand, 2883309 - 2883142
Alignment:
Q  784 actaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatata 883  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2883309 actaaccataacgtgatccgacaccttggcaccttgctgagaaagccaaggtttccctcacagtcatttctccaatatgaacatcatgttgactaatata 2883210  T
Q  884 tgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagatacct 951  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  2883209 tgcagcagttctctgaggtacaaattcatccatcccatgtccattataagttactctccctgatacct 2883142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 788 - 947
Target Start/End: Complemental strand, 2873103 - 2872944
Alignment:
Q  788 accataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgca 887  Q
    |||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873103 accatatcttgatccaactccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgca 2873004  T
Q  888 gcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagat 947  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  2873003 gcagttctttgaggtacaaattcatccattccatatccattataagtcactctaccagat 2872944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 201 - 529
Target Start/End: Complemental strand, 2883805 - 2883489
Alignment:
Q  201 actctaaataccttgtgactttacttcatagacaatcttaaagaacttgtaaagaataagagagtctcattttggctgtgctaatacctttagtacatag 300  Q
    |||||||||||||||||||| || | |||| | ||||||| | ||||| |||||||| ||| | ||||| ||||||      |||||||||||||||||     
T  2883805 actctaaataccttgtgactgtattgcataaataatcttacaaaacttttaaagaatgagaaaatctcaatttggc------aatacctttagtacataa 2883712  T
Q  301 tctgttaccacactttcctgttggcctccagttgcaactgcctagtatagtcaaattcaatcaaatgtacattgattaatatttatttccatggaattaa 400  Q
    || ||| | |||||||||||||||||||||||||| | ||||| |||||  |||| |||||  |||||       |||||||||||| || | |||||||    
T  2883711 tcagttgctacactttcctgttggcctccagttgccattgcct-gtatatccaaagtcaatagaatgtg------ttaatatttattgccttagaattaa 2883619  T
Q  401 tttcattaatctctttt-ttgtaacaaatattgataatagattcttcttaccttcataaagacatcaatatctgggtctggcttaatctttgcttccttt 499  Q
    |||||||||  | |||| ||| || |||| |||||||| | ||||||| |||||||| |||||||||| |||||||||||||||||| ||||||||||||    
T  2883618 tttcattaacttgttttgttgcaataaatgttgataattgcttcttctcaccttcatgaagacatcaacatctgggtctggcttaatatttgcttccttt 2883519  T
Q  500 tctcttctagacaactcagacaacaagtct 529  Q
    ||||||||||||| ||||| ||||||||||    
T  2883518 tctcttctagacagctcagccaacaagtct 2883489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 444 - 519
Target Start/End: Complemental strand, 2873813 - 2873738
Alignment:
Q  444 ttcttaccttcataaagacatcaatatctgggtctggcttaatctttgcttccttttctcttctagacaactcaga 519  Q
    |||| ||||||||  ||||||||||||||||||||||  | ||||||||||| |||||||||||| | ||||||||    
T  2873813 ttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttctacataactcaga 2873738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 23819119 - 23819167
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    |||||||  |||||||||||||| |||||||||||||||||||||||||    
T  23819119 agcttatagaaataagatgaaaacaacttatggacatgtcataagctgt 23819167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 43932474 - 43932512
Alignment:
Q  111 aaataagatgaaaataacttatggacatgtcataagctg 149  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  43932474 aaataagatgaaaacaacttatggacatgtcatgagctg 43932512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 2e-55; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 783 - 945
Target Start/End: Original strand, 44226355 - 44226517
Alignment:
Q  783 gactaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatat 882  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||    
T  44226355 gactaaccataacgtgatccaactccttggcaccttgctgagaaagccaaggtttccctcacagtcatttctccaatatgaacatcatgttggcttatat 44226454  T
Q  883 atgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccag 945  Q
    | ||||||||||||||||||||||| |||| ||  ||||| ||||| |||||||| |||||||    
T  44226455 aggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccag 44226517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 783 - 945
Target Start/End: Original strand, 44237153 - 44237315
Alignment:
Q  783 gactaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatat 882  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| || ||||    
T  44237153 gactaaccataacgtgatccaactccttggcatcttgctgagaaagccaaggtttctctcacagtcatttctccaatatgaacatcatgttggctgatat 44237252  T
Q  883 atgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccag 945  Q
    | || |||||||||||||||||||| || | ||  ||||| ||||| |||||||| |||||||    
T  44237253 aagccgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcacactcccag 44237315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 782 - 948
Target Start/End: Original strand, 44214184 - 44214350
Alignment:
Q  782 tgactaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaata 881  Q
    ||||| ||| ||||| |||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| || || |||    
T  44214184 tgactcaccgtaacgagatccaactccttggcaccttgctgagaaagctaaggtttccctcacagtcatttctccaatgtgaacatcatgctggctgata 44214283  T
Q  882 tatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagata 948  Q
    || ||||||||||||||||||||||| |||| ||  || |||||||| || |||||  |||||||||    
T  44214284 taagcagcagttctttgaggtacaaactcattcagtccgtgtccattgtaggtcacattcccagata 44214350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 448 - 510
Target Start/End: Original strand, 44226187 - 44226249
Alignment:
Q  448 taccttcataaagacatcaatatctgggtctggcttaatctttgcttccttttctcttctaga 510  Q
    |||||||||  ||||||||||||||||||| |||||||| |||||| |||| |||||||||||    
T  44226187 taccttcatgtagacatcaatatctgggtcaggcttaatgtttgctgccttctctcttctaga 44226249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 448 - 532
Target Start/End: Original strand, 44214022 - 44214106
Alignment:
Q  448 taccttcataaagacatcaatatctgggtctggcttaatctttgcttccttttctcttctagacaactcagacaacaagtctgtg 532  Q
    |||||||||  ||||||||||||||||||| ||||| || |||||| |||| ||||||||||| | |||||| | || |||||||    
T  44214022 taccttcatgtagacatcaatatctgggtcaggcttgatatttgctaccttctctcttctagaaagctcagatagcatgtctgtg 44214106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 448 - 510
Target Start/End: Original strand, 44237001 - 44237063
Alignment:
Q  448 taccttcataaagacatcaatatctgggtctggcttaatctttgcttccttttctcttctaga 510  Q
    |||||||||  ||||||||||||||||||| ||||| || |||||| |||| |||||||||||    
T  44237001 taccttcatgtagacatcaatatctgggtcaggcttgatatttgctgccttctctcttctaga 44237063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 29316813 - 29316767
Alignment:
Q  104 cttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    |||||| ||||||| |||||| |||||||| ||||||||||||||||    
T  29316813 cttatggaaataagctgaaaagaacttatgaacatgtcataagctgt 29316767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 1939372 - 1939319
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataagctgtcatta 155  Q
    |||||||| ||||||| |||||| | ||||||||||||||||||| ||| ||||    
T  1939372 agcttatggaaataagttgaaaacagcttatggacatgtcataagttgttatta 1939319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 9556253 - 9556310
Alignment:
Q  86 ataagctaccctaggaagcttatgtaaataagatgaaaataacttatggacatgtcat 143  Q
    |||||||| ||||| ||||||||| ||||||| |||||   |||||||||||||||||    
T  9556253 ataagctatcctagaaagcttatgaaaataagttgaaatctacttatggacatgtcat 9556310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 8e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 783 - 934
Target Start/End: Original strand, 39551713 - 39551864
Alignment:
Q  783 gactaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatat 882  Q
    |||||||||||||| |  ||||| ||||||  |||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||| ||||   | ||    
T  39551713 gactaaccataacgaggcccaactccttggacccttgctgagaaagccaaggtttctctaacagtcatttctccaatgtgaagatcattttgatccacat 39551812  T
Q  883 atgcagcagttctttgaggtacaaattcatccatcccatgtccattataagt 934  Q
    | ||||||||||||||||| ||||| |||| |||| |||| |||||||||||    
T  39551813 aagcagcagttctttgaggcacaaactcattcatctcatgaccattataagt 39551864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 783 - 937
Target Start/End: Complemental strand, 39359827 - 39359673
Alignment:
Q  783 gactaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatat 882  Q
    |||||||||||||| | |||||| ||||||   || |||||||| ||||| ||||| |||||||||||||||||||| |||| ||||| ||||   | ||    
T  39359827 gactaaccataacgaggtccaactccttggactctagctgagaaggccaaggtttctctaacagtcatttctccaatgtgaagatcattttgatccacat 39359728  T
Q  883 atgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcac 937  Q
    | |||||||||||||| |||||||| |||  |||| |||| ||||||||||||||    
T  39359727 aagcagcagttctttggggtacaaactcactcatctcatgaccattataagtcac 39359673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 816 - 946
Target Start/End: Complemental strand, 39333970 - 39333840
Alignment:
Q  816 cttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgaggtacaaattcatcca 915  Q
    ||||| ||||| |||| |||||| |||||||||| ||||||||| |||| ||||| ||||   | |||||||||||||||||| || |||||||||  ||    
T  39333970 cttgccgagaaggccagtgtttctctaacagtcaattctccaatgtgaagatcattttgatccacatatgcagcagttctttgggggacaaattcactca 39333871  T
Q  916 tcccatgtccattataagtcactctcccaga 946  Q
    || |||| |||||||||||||| || |||||    
T  39333870 tctcatgaccattataagtcacccttccaga 39333840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 816 - 946
Target Start/End: Complemental strand, 39345249 - 39345119
Alignment:
Q  816 cttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgaggtacaaattcatcca 915  Q
    ||||| ||||| ||||||||||| |||||||||| ||||||||| |||| ||||| ||||   | ||| |||||||||||||| || |||||||||  ||    
T  39345249 cttgccgagaaggccaatgtttctctaacagtcaattctccaatgtgaagatcattttgatccacataagcagcagttctttgggggacaaattcactca 39345150  T
Q  916 tcccatgtccattataagtcactctcccaga 946  Q
    || |||| |||||||||||||| || |||||    
T  39345149 tctcatgaccattataagtcacccttccaga 39345119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 784 - 937
Target Start/End: Original strand, 39542498 - 39542651
Alignment:
Q  784 actaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatata 883  Q
    ||||||||||||| |  ||||| ||||||  |||||| ||||| ||||| ||||| |||||||||||||||||||| ||||  |||| ||||   | |||    
T  39542498 actaaccataacgcggcccaactccttggacccttgccgagaaggccaaggtttctctaacagtcatttctccaatgtgaaggtcattttgatccacata 39542597  T
Q  884 tgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcac 937  Q
     || ||||||||||| || ||||| ||| ||||| |||| ||||||||||||||    
T  39542598 agcggcagttctttgggggacaaactcacccatctcatgaccattataagtcac 39542651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 800 - 937
Target Start/End: Original strand, 39578117 - 39578254
Alignment:
Q  800 tccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttga 899  Q
    |||||| |||||| | |||||||||||  |||| ||||| ||||| |||| ||||||||| |||| ||| | |||||| | ||| |||||||||||||||    
T  39578117 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttga 39578216  T
Q  900 ggtacaaattcatccatcccatgtccattataagtcac 937  Q
    |||||||| |||| |||| |||| || || ||||||||    
T  39578217 ggtacaaactcattcatctcatgaccgttgtaagtcac 39578254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 801 - 938
Target Start/End: Original strand, 39592590 - 39592727
Alignment:
Q  801 ccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgag 900  Q
    ||||||||||||   ||||| ||||| ||||  ||||| || ||||||| ||||||||  |||| ||||| |||||| | ||| |||||||||||||| |    
T  39592590 ccaacgccttggactcttgcggagaaggccatcgtttctctgacagtcaattctccaaggtgaagatcattttgactgacataagcagcagttctttggg 39592689  T
Q  901 gtacaaattcatccatcccatgtccattataagtcact 938  Q
    |||||||||| | |||| |||| ||||||||| |||||    
T  39592690 gtacaaattctttcatctcatgaccattataactcact 39592727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 782 - 934
Target Start/End: Original strand, 39568559 - 39568711
Alignment:
Q  782 tgactaaccataacgtgatccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaata 881  Q
    ||||||||||||||| | |||||| ||||||   | ||||||||| ||||| ||||| || || |||||||||||||| |||| ||||| ||||   | |    
T  39568559 tgactaaccataacgaggtccaactccttggactcgtgctgagaaggccaaggtttctcttactgtcatttctccaatgtgaagatcattttgatccaca 39568658  T
Q  882 tatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagt 934  Q
    ||||||||||||| ||| || ||||| |||  |||| |||| |||||||||||    
T  39568659 tatgcagcagttcgttgggggacaaactcactcatctcatgaccattataagt 39568711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 18516094 - 18516057
Alignment:
Q  111 aaataagatgaaaataacttatggacatgtcataagct 148  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  18516094 aaataagatgaaaataacttatgggcatatcataagct 18516057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 445 - 510
Target Start/End: Original strand, 39577922 - 39577987
Alignment:
Q  445 tcttaccttcataaagacatcaatatctgggtctggcttaatctttgcttccttttctcttctaga 510  Q
    |||||| |||||||| |||||||||||||| |||||  |||| |||   |||||||||||||||||    
T  39577922 tcttactttcataaacacatcaatatctggatctgggataatgtttctctccttttctcttctaga 39577987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 47134798 - 47134753
Alignment:
Q  101 aagcttatgtaaataagatgaaaataacttatggacatgtcataag 146  Q
    ||||||||| ||||||| |||||| ||||||||||| |||||||||    
T  47134798 aagcttatgaaaataagctgaaaacaacttatggacgtgtcataag 47134753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 800 - 886
Target Start/End: Complemental strand, 4496233 - 4496147
Alignment:
Q  800 tccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgc 886  Q
    |||||| |||||||| || ||||| ||| | || |||||  | |||||||||||||||| ||||||||||| |||||||||||||||    
T  4496233 tccaactccttggcatctagctgaaaaatctaaggtttcttttacagtcatttctccaacatgaacatcattttgactaatatatgc 4496147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 3600777 - 3600735
Alignment:
Q  103 gcttatgtaaataagatgaaaataacttatggacatgtcataa 145  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||    
T  3600777 gcttatgaaaataagttgaaaacaacttatggacatgtcataa 3600735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 9835938 - 9835892
Alignment:
Q  104 cttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    |||||| |||||||||||||| | |||||| ||||||||||||||||    
T  9835938 cttatggaaataagatgaaaacagcttatgaacatgtcataagctgt 9835892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 14339644 - 14339602
Alignment:
Q  103 gcttatgtaaataagatgaaaataacttatggacatgtcataa 145  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||    
T  14339644 gcttatgaaaataagttgaaaacaacttatggacatgtcataa 14339602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 13000465 - 13000420
Alignment:
Q  101 aagcttatgtaaataagatgaaaataacttatggacatgtcataag 146  Q
    ||||||||| ||||||| |||||| ||||| |||||||||||||||    
T  13000465 aagcttatggaaataagctgaaaacaacttgtggacatgtcataag 13000420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 25869303 - 25869262
Alignment:
Q  105 ttatgtaaataagatgaaaataacttatggacatgtcataag 146  Q
    ||||| ||||||| |||||| |||||||||||||||||||||    
T  25869303 ttatggaaataagctgaaaacaacttatggacatgtcataag 25869262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 41957489 - 41957443
Alignment:
Q  104 cttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||    
T  41957489 cttatgaaaataagatgaaaacaacttatggacatgtcataagctgt 41957443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 13604889 - 13604841
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    |||||||| ||||||| |||||| ||| |||||||||||||||||||||    
T  13604889 agcttatgaaaataagttgaaaacaacgtatggacatgtcataagctgt 13604841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 35963270 - 35963313
Alignment:
Q  101 aagcttatgtaaataagatgaaaataacttatggacatgtcata 144  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||    
T  35963270 aagcttatggaaataagctgaaaacaacttatggacatgtcata 35963313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 1899187 - 1899232
Alignment:
Q  105 ttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    ||||| ||||||| |||||| |||||||| ||||||||||||||||    
T  1899187 ttatggaaataagctgaaaacaacttatgcacatgtcataagctgt 1899232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 36639552 - 36639597
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataagc 147  Q
    |||||||| |||||||| ||||| |||||||||||| |||||||||    
T  36639552 agcttatgaaaataagaggaaaacaacttatggacacgtcataagc 36639597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 800 - 877
Target Start/End: Original strand, 2152544 - 2152621
Alignment:
Q  800 tccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgact 877  Q
    |||||| ||||| || |||||||||||||||| |||||| || ||||||||||||||||| |||  ||||| ||||||    
T  2152544 tccaaccccttgacatcttgctgagaaagccagtgtttctctcacagtcatttctccaatgtgattatcatattgact 2152621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 28689493 - 28689444
Alignment:
Q  101 aagcttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||||||    
T  28689493 aagcttatgaaaataagctgaaaacaacttatggacatgtcataagctgt 28689444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 27140508 - 27140556
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    |||||||| ||||||| |||||| |||||||||||||||||||||||||    
T  27140508 agcttatgcaaataagctgaaaacaacttatggacatgtcataagctgt 27140556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 35017606 - 35017649
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataa 145  Q
    |||||||| ||||||| |||||||||||||||||||||||||||    
T  35017606 agcttatggaaataagttgaaaataacttatggacatgtcataa 35017649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 4868429 - 4868474
Alignment:
Q  101 aagcttatgtaaataagatgaaaataacttatggacatgtcataag 146  Q
    ||||||||||||||||| |||||| ||||||| |||||||||||||    
T  4868429 aagcttatgtaaataagttgaaaacaacttattgacatgtcataag 4868474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 4202191 - 4202143
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    |||||| | ||||||| |||||||| |||||||||||||||||||||||    
T  4202191 agcttacgaaaataagctgaaaatagcttatggacatgtcataagctgt 4202143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 27963410 - 27963362
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    ||||||| |||||||| | |||| |||||||||||||||||||||||||    
T  27963410 agcttatataaataagctaaaaacaacttatggacatgtcataagctgt 27963362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 507
Target Start/End: Original strand, 2164587 - 2164650
Alignment:
Q  444 ttcttaccttcataaagacatcaatatctgggtctggcttaatctttgcttccttttctcttct 507  Q
    |||| ||||||||| || |||||| ||| || ||||| ||||||||||||||||| ||||||||    
T  2164587 ttctcaccttcatataggcatcaacatcaggatctggtttaatctttgcttccttctctcttct 2164650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 800 - 883
Target Start/End: Original strand, 2164800 - 2164883
Alignment:
Q  800 tccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatata 883  Q
    |||||| ||||| || |||||||||||||| |  ||||| || || |||||||||||||| |||  |||||||||||| |||||    
T  2164800 tccaaccccttgacatcttgctgagaaagctagggtttctcttacggtcatttctccaatgtgattatcatgttgacttatata 2164883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 12477323 - 12477280
Alignment:
Q  106 tatgtaaataagatgaaaataacttatggacatgtcataagctg 149  Q
    |||| ||||||| |||||| ||||||||||||||||||||||||    
T  12477323 tatggaaataagctgaaaacaacttatggacatgtcataagctg 12477280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 150
Target Start/End: Original strand, 27145968 - 27145999
Alignment:
Q  119 tgaaaataacttatggacatgtcataagctgt 150  Q
    ||||||||||||||||||||||||||||||||    
T  27145968 tgaaaataacttatggacatgtcataagctgt 27145999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 10199448 - 10199402
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataagct 148  Q
    |||||||| ||||||| |||||| |||||||| ||||||||||||||    
T  10199448 agcttatgaaaataagctgaaaacaacttatgaacatgtcataagct 10199402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 11695890 - 11695939
Alignment:
Q  101 aagcttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    ||||||||| ||||||| |||||| | |||||||||||||||||| ||||    
T  11695890 aagcttatgaaaataagttgaaaacagcttatggacatgtcataaactgt 11695939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 148
Target Start/End: Original strand, 27145589 - 27145618
Alignment:
Q  119 tgaaaataacttatggacatgtcataagct 148  Q
    ||||||||||||||||||||||||||||||    
T  27145589 tgaaaataacttatggacatgtcataagct 27145618  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 29723522 - 29723567
Alignment:
Q  105 ttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    ||||||||||||| |||||| |  ||||||||||||||||||||||    
T  29723522 ttatgtaaataagttgaaaacagtttatggacatgtcataagctgt 29723567  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 43333711 - 43333748
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatg 139  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  43333711 agcttatggaaataagatgaaaataatttatggacatg 43333748  T

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Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 29296335 - 29296292
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataa 145  Q
    |||||||| ||||||| |||||||||||||||||||||||||||    
T  29296335 agcttatgaaaataagctgaaaataacttatggacatgtcataa 29296292  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 7148679 - 7148740
Alignment:
Q  85 aataagctaccctaggaagcttatgtaaataagatgaaaataacttatggacatgtcataag 146  Q
    ||||||||||||| |  |||||||| ||||||| |||||||| |||||||||| ||||||||    
T  7148679 aataagctaccctggagagcttatgaaaataagttgaaaatagcttatggacaagtcataag 7148740  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 3528833 - 3528877
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataag 146  Q
    |||||||| |||||||||||||| || ||||||||||||||||||    
T  3528833 agcttatgaaaataagatgaaaacaagttatggacatgtcataag 3528877  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 7785784 - 7785736
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    |||||||| ||||||| |||||| ||||||| |||||||||||||||||    
T  7785784 agcttatggaaataagctgaaaacaacttatagacatgtcataagctgt 7785736  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 9027608 - 9027652
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataag 146  Q
    |||||||| ||||||| |||||| |||||||||||||||||||||    
T  9027608 agcttatgaaaataagctgaaaacaacttatggacatgtcataag 9027652  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 283122 - 283173
Alignment:
Q  99 ggaagcttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    ||||||||||  ||||||| ||||||||  ||||||||||||||||||||||    
T  283122 ggaagcttatagaaataagctgaaaatagtttatggacatgtcataagctgt 283173  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 8420237 - 8420191
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataagct 148  Q
    |||||||| ||||||| |||||||| ||| |||||||||||||||||    
T  8420237 agcttatggaaataagttgaaaatagcttgtggacatgtcataagct 8420191  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 27909678 - 27909636
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcata 144  Q
    |||||||| ||||||| |||||| |||||||||||||||||||    
T  27909678 agcttatggaaataagctgaaaacaacttatggacatgtcata 27909636  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 31583708 - 31583750
Alignment:
Q  101 aagcttatgtaaataagatgaaaataacttatggacatgtcat 143  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||    
T  31583708 aagcttatggaaataagttgaaaacaacttatggacatgtcat 31583750  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 31624291 - 31624336
Alignment:
Q  105 ttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    ||||| |||||| || ||||||||||||||||||||||| ||||||    
T  31624291 ttatgaaaataacattaaaataacttatggacatgtcatgagctgt 31624336  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 34939777 - 34939822
Alignment:
Q  105 ttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    ||||| ||||||| |||||| || ||||||||||||||||||||||    
T  34939777 ttatggaaataagctgaaaacaatttatggacatgtcataagctgt 34939822  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 1217838 - 1217792
Alignment:
Q  104 cttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    |||||| || ||||||||||| |||||||||||||||||||||||||    
T  1217838 cttatgaaagtaagatgaaaacaacttatggacatgtcataagctgt 1217792  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 42745067 - 42745112
Alignment:
Q  101 aagcttatgtaaataagatgaaaataacttatggacatgtcataag 146  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||||    
T  42745067 aagcttatggaaataagatgaaaacaacttatgaacatgtcataag 42745112  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 54180820 - 54180772
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    ||||||| |||||||| | |||| |||||||||||||||||||||||||    
T  54180820 agcttatataaataagctaaaaacaacttatggacatgtcataagctgt 54180772  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 12923357 - 12923319
Alignment:
Q  110 taaataagatgaaaataacttatggacatgtcataagct 148  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  12923357 taaataagctgaaaacaacttatggacatgtcataagct 12923319  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 24785235 - 24785281
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataagct 148  Q
    |||||||||||||||| | |||| |||||||| ||||||||||||||    
T  24785235 agcttatgtaaataagctaaaaacaacttatgaacatgtcataagct 24785281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 29771866 - 29771912
Alignment:
Q  100 gaagcttatgtaaataagatgaaaataacttatggacatgtcataag 146  Q
    |||||||||| ||||||| |||||| |||||||||||||||| ||||    
T  29771866 gaagcttatggaaataagttgaaaacaacttatggacatgtcctaag 29771912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 37273166 - 37273208
Alignment:
Q  104 cttatgtaaataagatgaaaataacttatggacatgtcataag 146  Q
    |||||| ||||||| |||||| |||||||||||||||||||||    
T  37273166 cttatggaaataagttgaaaacaacttatggacatgtcataag 37273208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 37825152 - 37825198
Alignment:
Q  102 agcttatgtaaataagatgaaaataacttatggacatgtcataagct 148  Q
    |||||||| ||||||  |||||| |||||||||||||||||||||||    
T  37825152 agcttatggaaataacctgaaaacaacttatggacatgtcataagct 37825198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 3467425 - 3467380
Alignment:
Q  105 ttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    ||||| |||||||||| ||| ||||||||| |||||||||||||||    
T  3467425 ttatggaaataagatgcaaacaacttatggccatgtcataagctgt 3467380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 306340 - 306404
Alignment:
Q  86 ataagctaccctaggaagcttatgtaaataagatgaaaataacttatggacatgtcataagctgt 150  Q
    |||||||| |||||  ||||||||||| |||| |||||| | ||||||| |||||||||||||||    
T  306340 ataagctatcctagagagcttatgtaagtaagctgaaaacagcttatgggcatgtcataagctgt 306404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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