View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4749-Insertion-2 (Length: 925)
Name: NF4749-Insertion-2
Description: NF4749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4749-Insertion-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 801; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 801; E-Value: 0
Query Start/End: Original strand, 8 - 925
Target Start/End: Original strand, 42086943 - 42087863
Alignment:
| Q |
8 |
tcctcaactttctctgtccatgttgtgcttctttcattttgatcatctgaataaattaccactttatcctccaaaccctcatttgaaaaccttggctttg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42086943 |
tcctcaactttctctgtccatgttgtgcttctttcattttgatcatctgaataaattaccactttatcctccaaaccctcatttgaaaacctttgctttg |
42087042 |
T |
|
| Q |
108 |
tttcttcaaacctgctattgttgtatccatttcctgaaccaccatcttctgtgctattttcctttgcttcccttcctccatcatgagatgtctccaccat |
207 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42087043 |
tttcttcaaacctgctattgttgtatccatttcttgaaccaccatcttctgtgctattttcctttgcttcccttcctccatcatgagatgtttccaccat |
42087142 |
T |
|
| Q |
208 |
ataatttagcttctgaacctgcgaggnnnnnnntaatcacacgggtaagcttaagttcaactcatttaattaatcgagcctaatacgaagcttgagtaaa |
307 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087143 |
ataacttagcttctgaacctgcgaggaaaaaaaaaatcacacggttaagcttaagttcaactcatttaattaatcgagcctaatacgaagcttgagtaaa |
42087242 |
T |
|
| Q |
308 |
taaataaacaaacttaaccgaatattttgcgagttgagcatgaatagttcacgaatagctgaactcgtttaaattaagctgtttatcgagacacaactct |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
42087243 |
taaataaacaaacttaaccgaatattttgcgagttgagcatgaatagttcacgaatagctgaactcgtttaaattaaactgtttatcgagacacaactat |
42087342 |
T |
|
| Q |
408 |
agttatgttacaatataattgcaagaaccaaagtaccaacttacctctgattgcaaagactctttctcttccttaaggcactgaaacttagaagctaaat |
507 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087343 |
agttatgttacaatataattgcaagaaccaaagtactaacttacctctgattgcaaagactctttctcttccttaaggcactgaaacttagaagctaaat |
42087442 |
T |
|
| Q |
508 |
tatcataatcatctttgagttttctgtattcttgttctatcctttttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctg |
607 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087443 |
tatcatattcatctttgagttttctgtattcttgttctatcctttttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctg |
42087542 |
T |
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| Q |
608 |
caaaccaagatctcttgcaagttgcatcttcttccttggttccaattttgattctgactcaaatatgcattctagtgatcttatctgttcatcactaaac |
707 |
Q |
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| T |
42087543 |
caaaccaagatctcttgcaagttgcatcttcttccttggttccaactttgattctgactcaaatatgcattctagtgatcttatctgttcatcactaaac |
42087642 |
T |
|
| Q |
708 |
cttctcttgttttctatcttcttgtttttcttctttgaattctgaggtgtctccaagcaactcatgctttcaacattttttccttttaaacccttcatga |
807 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42087643 |
cttctcttgttttctatcttcttgtttttcttctttgaattctgaggtgtctctaagcaactcatgctttcaacattttttcc-tttaaacccttcatga |
42087741 |
T |
|
| Q |
808 |
atattctcttcttcctccatcatattatatatggctaagg-ctaagttttgaattttcgg-atttgaaggaagatttgtttaataat-aaaaagattaaa |
904 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| |
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| T |
42087742 |
atattctcttcttcctccatcatattatatatggctaaggcctaagttttgaatttttggaatttgaaggaagatttgtttaataataaaaaagattaaa |
42087841 |
T |
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| Q |
905 |
atttgggga-ggggaataggat |
925 |
Q |
| |
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||||| || |||||||||||| |
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| T |
42087842 |
atttgttgagggggaataggat |
42087863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 558 - 616
Target Start/End: Complemental strand, 39342750 - 39342692
Alignment:
| Q |
558 |
ttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaag |
616 |
Q |
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| T |
39342750 |
ttccatcttgctctcctgttttggaaccaaacagctacttgtctaggctgcaacccaag |
39342692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 552 - 649
Target Start/End: Complemental strand, 9379118 - 9379021
Alignment:
| Q |
552 |
tttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgcatcttcttccttggttc |
649 |
Q |
| |
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|||||||||||||| |||||| |||| ||||||||||||||||||||||| |||||||| ||||| ||||| || | |||| |||||| |||||||| |
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| T |
9379118 |
tttgatttccatctagctcttttgttttgaaaccatatagcaacttgtcttggctgcaatccaagctctctagctaactgcaacttctttcttggttc |
9379021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 634
Target Start/End: Original strand, 24692391 - 24692455
Alignment:
| Q |
570 |
cttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgcat |
634 |
Q |
| |
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| T |
24692391 |
cttctgttttgaaaccatatagcaatttgtcttggctgcaatccaagagctcttgctagctgcat |
24692455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 564 - 631
Target Start/End: Original strand, 16762999 - 16763066
Alignment:
| Q |
564 |
cttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttg |
631 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||| || ||||||||||| ||| |||||||||| |
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| T |
16762999 |
cttgcccttctgttttgaaaccatatagcaacttgtcttggttgcaaaccaagctcttttgcaagttg |
16763066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 558 - 634
Target Start/End: Original strand, 17181907 - 17181983
Alignment:
| Q |
558 |
ttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgcat |
634 |
Q |
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||||||||||| ||||| || |||||||||||||||||||||||||| ||||| |||| |||||||||| ||||| |
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| T |
17181907 |
ttccatcttgcccttctattttgaaaccatatagcaacttgtctaggttgcaagttaagagctcttgcaagctgcat |
17181983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 552 - 610
Target Start/End: Original strand, 2342778 - 2342836
Alignment:
| Q |
552 |
tttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaa |
610 |
Q |
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|||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
2342778 |
tttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaa |
2342836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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