View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4749-Insertion-3 (Length: 498)
Name: NF4749-Insertion-3
Description: NF4749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4749-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 7 - 498
Target Start/End: Complemental strand, 27096733 - 27096229
Alignment:
| Q |
7 |
aggaatctattttccacgtggcattatctacacggtccatcatggtctagtggtccccatacctaggttagcactattatttttcccttctaatccaacg |
106 |
Q |
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| T |
27096733 |
aggaatctattttccacgtggcatcatctacacggtccatcatgctctagtggtccccatacctaggttagcactattatttttcccttctaatccaacg |
27096634 |
T |
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| Q |
107 |
caattaaggtatttgatccggtataaaatactgtaatgtatattactttaa-tttataggatttttcttatatgatcagcaatgtttaggtaactttgtg |
205 |
Q |
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| T |
27096633 |
caattaaggtatttgatccggtttaaaatactat-atgtatattactttaattttataggatttttcttatatggtcagcaatgtttaggtaactttgtg |
27096535 |
T |
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| Q |
206 |
gcgcattttaagtaattcatcatattaaaaatcataatttttgttaaaattagaaagatcattttttaag---aaattgcattatattctctctacagaa |
302 |
Q |
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| T |
27096534 |
gcgcattttaagtaattcatcatattaaaaatcataatttttgttaaaattagaaagttcattttttaagaaaaaattgcattatattctctctacagaa |
27096435 |
T |
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| Q |
303 |
tgacgtaaattccacgatacacttacttcgagttgatgcatagaacatgtgagtgttataaacgttagatacattgagttttattcc-----------ta |
391 |
Q |
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|| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
27096434 |
tgccgtaaattccacgatacacttactccgagttgatgtatagaacatgtgagtgttataaacgttagatacattgaattttattcctatgttatcgata |
27096335 |
T |
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| Q |
392 |
cgttaccgactacatctctatcttctctcttaagtaataaataaataaacttacttctatagagatttctctgtgctgtcttttgtttgaacttctactc |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||| |
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| T |
27096334 |
cgttaccgactacatctctatcttctctcttaagtaataaataaataaacttacttctatagaggtttctct-tgccgtctttcgtttgaacttctactc |
27096236 |
T |
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| Q |
492 |
ttgttga |
498 |
Q |
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| T |
27096235 |
ttgttga |
27096229 |
T |
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