View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4749-Insertion-6 (Length: 46)

Name: NF4749-Insertion-6
Description: NF4749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4749-Insertion-6
NF4749-Insertion-6
[»] chr5 (13 HSPs)
chr5 (7-46)||(40886752-40886791)
chr5 (8-46)||(10285199-10285237)
chr5 (8-46)||(12806995-12807033)
chr5 (8-46)||(25773746-25773784)
chr5 (8-43)||(734483-734518)
chr5 (8-43)||(11319656-11319691)
chr5 (8-43)||(37900769-37900804)
chr5 (8-43)||(39070980-39071015)
chr5 (8-46)||(30403103-30403141)
chr5 (8-46)||(30720634-30720672)
chr5 (8-46)||(36561241-36561279)
chr5 (8-43)||(7277567-7277602)
chr5 (8-39)||(25683377-25683408)
[»] scaffold1431 (1 HSPs)
scaffold1431 (8-46)||(41-79)
[»] chr8 (16 HSPs)
chr8 (8-46)||(2540073-2540111)
chr8 (8-46)||(3585548-3585586)
chr8 (8-46)||(11174365-11174403)
chr8 (8-46)||(11646467-11646505)
chr8 (8-46)||(30999665-30999703)
chr8 (8-46)||(37345668-37345706)
chr8 (8-46)||(40058445-40058483)
chr8 (8-46)||(40918873-40918911)
chr8 (8-46)||(43275541-43275579)
chr8 (8-43)||(13881099-13881134)
chr8 (8-46)||(7147010-7147048)
chr8 (8-46)||(36068177-36068215)
chr8 (9-43)||(27035094-27035128)
chr8 (8-46)||(37510363-37510401)
chr8 (8-43)||(28562519-28562554)
chr8 (8-39)||(35866711-35866742)
[»] chr7 (12 HSPs)
chr7 (8-46)||(10981605-10981643)
chr7 (8-46)||(27813908-27813946)
chr7 (8-46)||(36453266-36453304)
chr7 (8-46)||(40349057-40349095)
chr7 (8-46)||(47110546-47110584)
chr7 (8-43)||(3091614-3091649)
chr7 (16-46)||(25614495-25614525)
chr7 (8-40)||(16360479-16360511)
chr7 (8-43)||(27942184-27942219)
chr7 (8-39)||(28200304-28200335)
chr7 (8-46)||(3498896-3498934)
chr7 (9-43)||(7743542-7743576)
[»] chr6 (12 HSPs)
chr6 (8-46)||(1605676-1605714)
chr6 (8-46)||(7761396-7761434)
chr6 (8-46)||(8626579-8626617)
chr6 (8-46)||(29260289-29260327)
chr6 (8-46)||(30734625-30734663)
chr6 (8-43)||(8235721-8235756)
chr6 (8-46)||(4129524-4129562)
chr6 (8-46)||(13757305-13757343)
chr6 (8-45)||(31559879-31559916)
chr6 (11-46)||(17942545-17942580)
chr6 (8-43)||(30235452-30235487)
chr6 (8-46)||(14287085-14287123)
[»] chr4 (19 HSPs)
chr4 (8-46)||(12071658-12071696)
chr4 (8-46)||(22321409-22321447)
chr4 (8-46)||(24706389-24706427)
chr4 (8-46)||(25704748-25704786)
chr4 (8-46)||(34324724-34324762)
chr4 (8-46)||(44568934-44568972)
chr4 (8-45)||(21310522-21310559)
chr4 (8-46)||(14261141-14261179)
chr4 (8-46)||(32543577-32543615)
chr4 (8-46)||(40122627-40122665)
chr4 (8-46)||(50767961-50767999)
chr4 (8-43)||(6129093-6129128)
chr4 (8-46)||(21661677-21661715)
chr4 (8-46)||(21670441-21670479)
chr4 (8-40)||(26676714-26676746)
chr4 (8-43)||(19692820-19692855)
chr4 (8-43)||(19703405-19703440)
chr4 (9-39)||(20249162-20249192)
chr4 (8-42)||(51777715-51777749)
[»] chr3 (13 HSPs)
chr3 (8-46)||(198952-198990)
chr3 (8-46)||(13364940-13364978)
chr3 (8-46)||(19241810-19241848)
chr3 (8-46)||(23088073-23088111)
chr3 (8-46)||(46694252-46694290)
chr3 (8-46)||(3383173-3383211)
chr3 (8-46)||(36881377-36881415)
chr3 (8-45)||(29375235-29375272)
chr3 (8-43)||(6901661-6901696)
chr3 (8-43)||(18356012-18356047)
chr3 (8-43)||(19897072-19897107)
chr3 (8-43)||(43750234-43750269)
chr3 (8-46)||(27707130-27707168)
[»] chr2 (8 HSPs)
chr2 (8-46)||(1646384-1646422)
chr2 (8-46)||(22388277-22388315)
chr2 (8-46)||(23366886-23366924)
chr2 (8-46)||(39938267-39938305)
chr2 (8-46)||(1102600-1102638)
chr2 (8-46)||(3519005-3519043)
chr2 (8-38)||(37673887-37673917)
chr2 (7-39)||(12969888-12969920)
[»] chr1 (14 HSPs)
chr1 (8-46)||(284430-284468)
chr1 (8-46)||(23045421-23045459)
chr1 (8-46)||(40783799-40783837)
chr1 (8-46)||(47037994-47038032)
chr1 (8-46)||(321723-321761)
chr1 (8-43)||(23526337-23526372)
chr1 (7-39)||(24772054-24772086)
chr1 (7-39)||(33082841-33082873)
chr1 (8-43)||(27143156-27143191)
chr1 (8-39)||(27211113-27211144)
chr1 (8-39)||(31003935-31003966)
chr1 (8-43)||(33711192-33711227)
chr1 (8-43)||(46771734-46771769)
chr1 (8-43)||(52037267-52037302)
[»] scaffold1770 (1 HSPs)
scaffold1770 (8-46)||(259-297)
[»] scaffold0062 (1 HSPs)
scaffold0062 (8-43)||(410-445)
[»] scaffold0025 (1 HSPs)
scaffold0025 (8-43)||(65308-65343)
[»] scaffold0054 (1 HSPs)
scaffold0054 (7-39)||(45550-45582)
[»] scaffold0076 (1 HSPs)
scaffold0076 (9-43)||(15465-15499)


Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.00000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 40886791 - 40886752
Alignment:
Q  7 attttctataatacccttaatcatttattatttcatttta 46  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40886791 attttctataatacccttaatcatttattatttcatttta 40886752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 10285237 - 10285199
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10285237 ttttctataatacccttaatcatttattatttcatttta 10285199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 12807033 - 12806995
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12807033 ttttctataatacccttaatcatttattatttcatttta 12806995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 25773746 - 25773784
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25773746 ttttctataatacccttaatcatttattatttcatttta 25773784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 734518 - 734483
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    |||||||||||||||||| |||||||||||||||||    
T  734518 ttttctataatacccttactcatttattatttcatt 734483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 11319656 - 11319691
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    |||||||||||||||||| |||||||||||||||||    
T  11319656 ttttctataatacccttactcatttattatttcatt 11319691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 37900804 - 37900769
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    ||||||||||||||||||| ||||||||||||||||    
T  37900804 ttttctataatacccttaaccatttattatttcatt 37900769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 39070980 - 39071015
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    |||||||||||||||||| |||||||||||||||||    
T  39070980 ttttctataatacccttactcatttattatttcatt 39071015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 30403141 - 30403103
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  30403141 ttttctataatactcttaatcatttgttatttcatttta 30403103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 30720672 - 30720634
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  30720672 ttttttataatacccttaatcatctattatttcatttta 30720634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 36561279 - 36561241
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  36561279 ttttctataatacctttaaccatttattatttcatttta 36561241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 7277602 - 7277567
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    |||||||||||||| |||| ||||||||||||||||    
T  7277602 ttttctataatacctttaaccatttattatttcatt 7277567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 25683408 - 25683377
Alignment:
Q  8 ttttctataatacccttaatcatttattattt 39  Q
    ||||||||||||||||||| ||||||||||||    
T  25683408 ttttctataatacccttaaccatttattattt 25683377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 39; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 79 - 41
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  79 ttttctataatacccttaatcatttattatttcatttta 41  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.00000000000005; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 2540111 - 2540073
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2540111 ttttctataatacccttaatcatttattatttcatttta 2540073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 3585548 - 3585586
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3585548 ttttctataatacccttaatcatttattatttcatttta 3585586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 11174403 - 11174365
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11174403 ttttctataatacccttaatcatttattatttcatttta 11174365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 11646505 - 11646467
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11646505 ttttctataatacccttaatcatttattatttcatttta 11646467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 30999703 - 30999665
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30999703 ttttctataatacccttaatcatttattatttcatttta 30999665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 37345668 - 37345706
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37345668 ttttctataatacccttaatcatttattatttcatttta 37345706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 40058483 - 40058445
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40058483 ttttctataatacccttaatcatttattatttcatttta 40058445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 40918911 - 40918873
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40918911 ttttctataatacccttaatcatttattatttcatttta 40918873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 43275579 - 43275541
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43275579 ttttctataatacccttaatcatttattatttcatttta 43275541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 13881134 - 13881099
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  13881134 ttttctataatacccttaatcatttattatttcatt 13881099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 7147010 - 7147048
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  7147010 ttttttataatacccttaatcatttattatttcatttta 7147048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 36068177 - 36068215
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  36068177 ttttctataatacccttaatcattaattatttcatttta 36068215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 27035094 - 27035128
Alignment:
Q  9 tttctataatacccttaatcatttattatttcatt 43  Q
    |||||||||||||||||| ||||||||||||||||    
T  27035094 tttctataatacccttaaccatttattatttcatt 27035128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 37510363 - 37510401
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  37510363 ttttcaataatacccttaatcatttaatatttcatttta 37510401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 28562519 - 28562554
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    |||||||||||||||||| |||||||| ||||||||    
T  28562519 ttttctataatacccttactcatttatgatttcatt 28562554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 35866711 - 35866742
Alignment:
Q  8 ttttctataatacccttaatcatttattattt 39  Q
    ||||||||||||||||||| ||||||||||||    
T  35866711 ttttctataatacccttaaacatttattattt 35866742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.00000000000005; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 10981605 - 10981643
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10981605 ttttctataatacccttaatcatttattatttcatttta 10981643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 27813908 - 27813946
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27813908 ttttctataatacccttaatcatttattatttcatttta 27813946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 36453304 - 36453266
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36453304 ttttctataatacccttaatcatttattatttcatttta 36453266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 40349057 - 40349095
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40349057 ttttctataatacccttaatcatttattatttcatttta 40349095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 47110546 - 47110584
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  47110546 ttttctataatacccttaatcatttattattttatttta 47110584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 3091614 - 3091649
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    ||||||||||||||||||| ||||||||||||||||    
T  3091614 ttttctataatacccttaaccatttattatttcatt 3091649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 25614525 - 25614495
Alignment:
Q  16 aatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||    
T  25614525 aatacccttaatcatttattatttcatttta 25614495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 16360479 - 16360511
Alignment:
Q  8 ttttctataatacccttaatcatttattatttc 40  Q
    ||||||||||||||||||| |||||||||||||    
T  16360479 ttttctataatacccttaaccatttattatttc 16360511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 27942219 - 27942184
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    |||||||||||||| |||| ||||||||||||||||    
T  27942219 ttttctataatacctttaaccatttattatttcatt 27942184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 28200304 - 28200335
Alignment:
Q  8 ttttctataatacccttaatcatttattattt 39  Q
    |||||||||||| |||||||||||||||||||    
T  28200304 ttttctataatatccttaatcatttattattt 28200335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 3498934 - 3498896
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||  |||| |||||||||||||||||||    
T  3498934 ttttctataatacttttaaccatttattatttcatttta 3498896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 7743576 - 7743542
Alignment:
Q  9 tttctataatacccttaatcatttattatttcatt 43  Q
    ||||||||||||| ||||| |||||||||||||||    
T  7743576 tttctataataccgttaattatttattatttcatt 7743542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.00000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 1605676 - 1605714
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1605676 ttttctataatacccttaatcatttattatttcatttta 1605714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 7761396 - 7761434
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7761396 ttttctataatacccttaatcatttattatttcatttta 7761434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 8626579 - 8626617
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8626579 ttttctataatacccttaatcatttattatttcatttta 8626617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 29260289 - 29260327
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29260289 ttttctataatacccttaatcatttattatttcatttta 29260327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 30734663 - 30734625
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30734663 ttttctataatacccttaatcatttattatttcatttta 30734625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 8235721 - 8235756
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  8235721 ttttctataatacccttaatcatttattatttcatt 8235756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 4129524 - 4129562
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  4129524 ttttctataatacccttaaccatttattatttcatttta 4129562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 13757305 - 13757343
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  13757305 ttttctataatacccttaatcaattattatttcatttta 13757343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 31559916 - 31559879
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttt 45  Q
    |||||| |||||||||||||||||||||||||||||||    
T  31559916 ttttctgtaatacccttaatcatttattatttcatttt 31559879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 17942545 - 17942580
Alignment:
Q  11 tctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||| |||||||||||||||||||    
T  17942545 tctataatacccttaaccatttattatttcatttta 17942580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 30235487 - 30235452
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    ||||||||| ||| ||||||||||||||||||||||    
T  30235487 ttttctatattactcttaatcatttattatttcatt 30235452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 14287085 - 14287123
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    ||||||||||||||||||  | |||||||||||||||||    
T  14287085 ttttctataatacccttacccctttattatttcatttta 14287123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.00000000000005; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 12071658 - 12071696
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12071658 ttttctataatacccttaatcatttattatttcatttta 12071696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 22321447 - 22321409
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22321447 ttttctataatacccttaatcatttattatttcatttta 22321409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 24706427 - 24706389
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24706427 ttttctataatacccttaatcatttattatttcatttta 24706389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 25704748 - 25704786
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25704748 ttttctataatacccttaatcatttattatttcatttta 25704786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 34324762 - 34324724
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34324762 ttttctataatacccttaatcatttattatttcatttta 34324724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 44568934 - 44568972
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44568934 ttttctataatacccttaatcatttattatttcatttta 44568972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 21310522 - 21310559
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttt 45  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21310522 ttttctataatacccttaatcatttattatttcatttt 21310559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 14261141 - 14261179
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14261141 ttttctataatacccttaataatttattatttcatttta 14261179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 32543577 - 32543615
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  32543577 ttttttataatacccttaatcatttattatttcatttta 32543615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 40122665 - 40122627
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  40122665 ttttctataatacccttaaccatttattatttcatttta 40122627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 50767961 - 50767999
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  50767961 ttttctataatacccttaataatttattatttcatttta 50767999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 6129128 - 6129093
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    ||||||| ||||||||||||||||||||||||||||    
T  6129128 ttttctacaatacccttaatcatttattatttcatt 6129093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 21661715 - 21661677
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  21661715 ttttctataatacctttaaccatttattatttcatttta 21661677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 21670479 - 21670441
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  21670479 ttttctataatacctttaaccatttattatttcatttta 21670441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 26676746 - 26676714
Alignment:
Q  8 ttttctataatacccttaatcatttattatttc 40  Q
    |||||||||||||||||| ||||||||||||||    
T  26676746 ttttctataatacccttactcatttattatttc 26676714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 19692820 - 19692855
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    |||||||||||| ||||| |||||||||||||||||    
T  19692820 ttttctataatatccttactcatttattatttcatt 19692855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 19703405 - 19703440
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    |||||||||||| ||||| |||||||||||||||||    
T  19703405 ttttctataatatccttactcatttattatttcatt 19703440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 20249192 - 20249162
Alignment:
Q  9 tttctataatacccttaatcatttattattt 39  Q
    |||||||||||||||||| ||||||||||||    
T  20249192 tttctataatacccttaaccatttattattt 20249162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 51777715 - 51777749
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcat 42  Q
    ||||||||||||| ||||| |||||||||||||||    
T  51777715 ttttctataatactcttaaccatttattatttcat 51777749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.00000000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 198952 - 198990
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  198952 ttttctataatacccttaatcatttattatttcatttta 198990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 13364940 - 13364978
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13364940 ttttctataatacccttaatcatttattatttcatttta 13364978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 19241848 - 19241810
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19241848 ttttctataatacccttaatcatttattatttcatttta 19241810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 23088111 - 23088073
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23088111 ttttctataatacccttaatcatttattatttcatttta 23088073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 46694290 - 46694252
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46694290 ttttctataatacccttaatcatttattatttcatttta 46694252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 3383173 - 3383211
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  3383173 ttttctataatacccttaaacatttattatttcatttta 3383211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 36881377 - 36881415
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  36881377 ttttctataatacccttaattatttattatttcatttta 36881415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 29375235 - 29375272
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttt 45  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  29375235 ttttctataatacccttaaccatttattatttcttttt 29375272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 6901661 - 6901696
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    |||||| ||||||||||| |||||||||||||||||    
T  6901661 ttttctctaatacccttactcatttattatttcatt 6901696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 18356047 - 18356012
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    |||||||||||||||||| |||||||| ||||||||    
T  18356047 ttttctataatacccttactcatttatcatttcatt 18356012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 19897107 - 19897072
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    |||||||||||||||||| || ||||||||||||||    
T  19897107 ttttctataatacccttactcttttattatttcatt 19897072  T

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Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 43750234 - 43750269
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    ||||||||||||| ||||| ||||||||||||||||    
T  43750234 ttttctataatacacttaaccatttattatttcatt 43750269  T

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Target: chr3; HSP #13
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 27707168 - 27707130
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||| |||||| ||||||||||||| |||||    
T  27707168 ttttctataatatccttaaccatttattatttcttttta 27707130  T

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Target: chr2 (Bit Score: 39; Significance: 0.00000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 1646384 - 1646422
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1646384 ttttctataatacccttaatcatttattatttcatttta 1646422  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 22388315 - 22388277
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22388315 ttttctataatacccttaatcatttattatttcatttta 22388277  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 23366886 - 23366924
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23366886 ttttctataatacccttaatcatttattatttcatttta 23366924  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 39938267 - 39938305
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39938267 ttttctataatacccttaatcatttattatttcatttta 39938305  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 1102600 - 1102638
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  1102600 ttttctataatacccttaaccatttattatttcatttta 1102638  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 3519005 - 3519043
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  3519005 ttttctataatacccttaataatttattatttcatttta 3519043  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 37673917 - 37673887
Alignment:
Q  8 ttttctataatacccttaatcatttattatt 38  Q
    |||||||||||||||||||||||||||||||    
T  37673917 ttttctataatacccttaatcatttattatt 37673887  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 12969920 - 12969888
Alignment:
Q  7 attttctataatacccttaatcatttattattt 39  Q
    |||||||||||||||||||| ||||||||||||    
T  12969920 attttctataatacccttaaccatttattattt 12969888  T

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Target: chr1 (Bit Score: 39; Significance: 0.00000000000005; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 284430 - 284468
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  284430 ttttctataatacccttaatcatttattatttcatttta 284468  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 23045459 - 23045421
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23045459 ttttctataatacccttaatcatttattatttcatttta 23045421  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 40783837 - 40783799
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40783837 ttttctataatacccttaatcatttattatttcatttta 40783799  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 47038032 - 47037994
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47038032 ttttctataatacccttaatcatttattatttcatttta 47037994  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 321723 - 321761
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  321723 ttttctataatatccttaatcatttattatttcatttta 321761  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 23526337 - 23526372
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23526337 ttttctataatacccttaaccatttattatttcatt 23526372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 24772086 - 24772054
Alignment:
Q  7 attttctataatacccttaatcatttattattt 39  Q
    |||||||||||||||||||| ||||||||||||    
T  24772086 attttctataatacccttaaccatttattattt 24772054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 33082841 - 33082873
Alignment:
Q  7 attttctataatacccttaatcatttattattt 39  Q
    |||||||||||||||||||| ||||||||||||    
T  33082841 attttctataatacccttaaccatttattattt 33082873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 27143191 - 27143156
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    ||||||||||||  ||||||||||||||||||||||    
T  27143191 ttttctataatattcttaatcatttattatttcatt 27143156  T

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Target: chr1; HSP #10
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 27211144 - 27211113
Alignment:
Q  8 ttttctataatacccttaatcatttattattt 39  Q
    ||||||||||||||||||| ||||||||||||    
T  27211144 ttttctataatacccttaaccatttattattt 27211113  T

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Target: chr1; HSP #11
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 31003966 - 31003935
Alignment:
Q  8 ttttctataatacccttaatcatttattattt 39  Q
    ||||||||||||||||||| ||||||||||||    
T  31003966 ttttctataatacccttaaccatttattattt 31003935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 33711192 - 33711227
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    |||| ||||||||||||||| |||||||||||||||    
T  33711192 ttttttataatacccttaattatttattatttcatt 33711227  T

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Target: chr1; HSP #13
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 46771734 - 46771769
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    ||||||||||||||||||| |||||||| |||||||    
T  46771734 ttttctataatacccttaaccatttattttttcatt 46771769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 52037302 - 52037267
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    ||||||||||||| ||||| ||||||||||||||||    
T  52037302 ttttctataatactcttaaccatttattatttcatt 52037267  T

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Target: scaffold1770 (Bit Score: 35; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 259 - 297
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatttta 46  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  259 ttttctataatacccttaaccatttattatttcatttta 297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 32; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 445 - 410
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    |||| |||||||||||||||||||||||||||||||    
T  445 ttttttataatacccttaatcatttattatttcatt 410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 32; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 65343 - 65308
Alignment:
Q  8 ttttctataatacccttaatcatttattatttcatt 43  Q
    ||||||||||||||||||| ||||||||||||||||    
T  65343 ttttctataatacccttaaccatttattatttcatt 65308  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.00000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 45550 - 45582
Alignment:
Q  7 attttctataatacccttaatcatttattattt 39  Q
    |||||||||||||||||||| ||||||||||||    
T  45550 attttctataatacccttaaccatttattattt 45582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 27; Significance: 0.0000007; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 15499 - 15465
Alignment:
Q  9 tttctataatacccttaatcatttattatttcatt 43  Q
    ||||||| |||||||||| ||||||||||||||||    
T  15499 tttctattatacccttaaccatttattatttcatt 15465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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