View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4749_high_1 (Length: 321)

Name: NF4749_high_1
Description: NF4749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4749_high_1
NF4749_high_1
[»] chr8 (9 HSPs)
chr8 (7-305)||(44912588-44912886)
chr8 (9-187)||(44913573-44913751)
chr8 (138-206)||(25479794-25479862)
chr8 (137-210)||(6414582-6414655)
chr8 (239-294)||(30406025-30406080)
chr8 (250-294)||(197917-197961)
chr8 (250-294)||(312754-312798)
chr8 (250-294)||(43807716-43807760)
chr8 (250-294)||(41949682-41949726)
[»] chr4 (7 HSPs)
chr4 (27-184)||(40414457-40414615)
chr4 (59-187)||(24412778-24412906)
chr4 (80-179)||(24412922-24413021)
chr4 (134-216)||(26905317-26905398)
chr4 (250-294)||(8892854-8892898)
chr4 (233-294)||(50628146-50628207)
chr4 (250-294)||(44151438-44151482)
[»] chr6 (3 HSPs)
chr6 (28-175)||(5437791-5437938)
chr6 (250-294)||(17887078-17887122)
chr6 (250-294)||(27552343-27552387)
[»] chr1 (5 HSPs)
chr1 (58-175)||(30647445-30647565)
chr1 (58-175)||(30642631-30642748)
chr1 (135-175)||(51866548-51866588)
chr1 (250-294)||(26315893-26315937)
chr1 (233-294)||(43592037-43592098)
[»] chr3 (5 HSPs)
chr3 (105-175)||(22931765-22931835)
chr3 (134-175)||(36082722-36082763)
chr3 (250-294)||(54167577-54167621)
chr3 (7-66)||(1299260-1299318)
chr3 (250-294)||(21850079-21850123)
[»] scaffold0019 (1 HSPs)
scaffold0019 (134-201)||(59575-59642)
[»] chr2 (3 HSPs)
chr2 (134-175)||(7468129-7468170)
chr2 (250-294)||(36674931-36674975)
chr2 (250-294)||(8055272-8055316)
[»] scaffold0044 (1 HSPs)
scaffold0044 (250-294)||(45098-45142)
[»] chr7 (2 HSPs)
chr7 (250-294)||(7940316-7940360)
chr7 (250-294)||(27761277-27761321)
[»] chr5 (4 HSPs)
chr5 (250-294)||(7099607-7099651)
chr5 (250-294)||(12023169-12023213)
chr5 (250-294)||(16798549-16798593)
chr5 (250-294)||(37681916-37681960)
[»] scaffold0440 (2 HSPs)
scaffold0440 (250-294)||(2860-2904)
scaffold0440 (250-294)||(7386-7430)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 44912588 - 44912886
Alignment:
Q  7 gagagaagaaagagaatattaattgttgtaatcttatgagttttattaattgtgaaaagtgactacatcatatcttatataagaagcttatttacatcgc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44912588 gagagaagaaagagaatattaattgttgtaatcttatgagttttattaattgtgaaaagtgactacatcatgtcttatataagaagcttatttacatcgc 44912687  T
Q  107 ttgtttagtaagctatctaaacaaacataacaaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatatacccc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  44912688 ttgtttagtaagctatctaaacaaacataacaaacttagctagattacctaactaacttgtaacaaacttttataccccaatatgtataatatatacccg 44912787  T
Q  207 aacgggtatatagtctaaacttgttcaacctttcaatcttaactgccttagtgaatatgtcaggaagttgcagctcagtagaacaatggaaatctttag 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44912788 aacgggtatatagtctaaacttgttcaacctttcaatcttaactgccttagtgaatatgtcaggaagttgcagctcagtagaacaatggaaatctttag 44912886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 44913573 - 44913751
Alignment:
Q  9 gagaagaaagagaatattaattgttgtaatcttatgagttttattaattgtgaaaagtgactacatcatatcttatataagaagcttatttacatcgctt 108  Q
    ||||| |||||||  |||||||||||||||||||||||||| |||| ||||||||||||| ||||||||  ||||||||| ||||||||| |||| ||||    
T  44913573 gagaataaagagatgattaattgttgtaatcttatgagtttcattagttgtgaaaagtgattacatcatgccttatataaaaagcttattcacattgctt 44913672  T
Q  109 gtttagtaagctatctaaacaaacataacaaacttagctagattatctaactaacttgtaacaaacttttaaaccccaa 187  Q
    | ||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||| || |||||||    
T  44913673 gcttagtaagctatctaaacaaacataacaaatatagctagattacctaactaacttgtaacaaacttctataccccaa 44913751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 25479862 - 25479794
Alignment:
Q  138 aaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatatacccc 206  Q
    |||||||||||||||  ||||||||||| ||||||||||||| ||||| | | ||||||||||||||||    
T  25479862 aaacttagctagatttcctaactaacttttaacaaacttttatacccctacaagtataatatatacccc 25479794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 6414655 - 6414582
Alignment:
Q  137 caaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatataccccaacg 210  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||| ||||| |   ||||||||||| ||||||||    
T  6414655 caaacttagcttgattacctaactaacttgtgacaaacttttatacccccaagggtataatatattccccaacg 6414582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 30406025 - 30406080
Alignment:
Q  239 tcaatcttaactgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||| | |||||||||||||||||| | ||| ||||||||||||||||||||    
T  30406025 tcaatcttcaatgccttagtgaatatgtctgcaagctgcagctcagtagaacaatg 30406080  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 197917 - 197961
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||    
T  197917 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatg 197961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 312754 - 312798
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||    
T  312754 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatg 312798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 43807716 - 43807760
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||    
T  43807716 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatg 43807760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 41949726 - 41949682
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| |||||||||||||| |||||    
T  41949726 tgccttagtgaatatgtctgcaagctgcagctcagtagagcaatg 41949682  T

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Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 27 - 184
Target Start/End: Original strand, 40414457 - 40414615
Alignment:
Q  27 aattgttgtaatcttatgagtttt-attaattgtgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatcta 125  Q
    ||||||||||| |||| ||||||| |||| | ||||||||||| |||| |||  ||||||||||| |||||||||||| ||||| |||||||||||||||    
T  40414457 aattgttgtaaacttacgagttttcattattagtgaaaagtgattacaacatgccttatataagaggcttatttacattgcttgcttagtaagctatcta 40414556  T
Q  126 aacaaacataacaaacttagctagattatctaactaacttgtaacaaacttttaaaccc 184  Q
    |||||||||||||||||||| ||||||| ||||||||||||||| |||| |||| ||||    
T  40414557 aacaaacataacaaacttagttagattaactaactaacttgtaataaacctttataccc 40414615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 59 - 187
Target Start/End: Original strand, 24412778 - 24412906
Alignment:
Q  59 tgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatctaaacaaacataacaaacttagctagattatctaa 158  Q
    |||||||||| |||| | |  ||||||||||| ||||||| |||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||  |||    
T  24412778 tgaaaagtgattacaacgtgccttatataagaggcttattcacattgcttgcttagtaaactatctaaacaaacataacaaacttagttagattacataa 24412877  T
Q  159 ctaacttgtaacaaacttttaaaccccaa 187  Q
    || |||||||||||||||||| |||||||    
T  24412878 cttacttgtaacaaacttttataccccaa 24412906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 24412922 - 24413021
Alignment:
Q  80 cttatataagaagcttatttacatcgcttgtttagtaagctatctaaacaaacataacaaacttagctagattatctaactaacttgtaacaaactttta 179  Q
    ||||||||||| ||||||| |||| ||||| |||| || |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  24412922 cttatataagaggcttattcacattgcttgcttagcaaactatctaaccaaacgtaacaaacttagctagattacctaactaacttgtaacaaactttta 24413021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 26905398 - 26905317
Alignment:
Q  134 taacaaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatataccccaacgggtata 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||   | ||||||||||||| |||| |||||||    
T  26905398 taacaaacttagctagattttctaactaacttgtaacaaacttttatacccc-ccaagtataatatatactccaatgggtata 26905317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 8892854 - 8892898
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | |||||||||||||||||| |||||    
T  8892854 tgccttagtgaatatgtctgcaagttgcagctcagtagagcaatg 8892898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 50628146 - 50628207
Alignment:
Q  233 aacctttcaatcttaactgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    ||||| |||| ||| | |||||||||||||||||| | ||| |||||||||||||| |||||    
T  50628146 aacctgtcaaccttcaatgccttagtgaatatgtctgcaagctgcagctcagtagagcaatg 50628207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 44151482 - 44151438
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| ||||||| ||||||||||||    
T  44151482 tgccttagtgaatatgtctgcaagctgcagcttagtagaacaatg 44151438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 5437938 - 5437791
Alignment:
Q  28 attgttgtaatcttatgagttttattaattgtgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatctaaa 127  Q
    |||||||||||||  ||||||| |||| ||||||||| ||| |||| |||  ||||||||||| ||||||| |||| ||||| |||||||||||||||||    
T  5437938 attgttgtaatctattgagtttcattagttgtgaaaaatgattacaacatgccttatataagaggcttattcacattgcttgcttagtaagctatctaaa 5437839  T
Q  128 caaacataacaaact-tagctagattatctaactaacttgtaacaaact 175  Q
    |||||||||||||||  |||||| || |||||||||| |||||||||||    
T  5437838 caaacataacaaactcaagctag-ttttctaactaacctgtaacaaact 5437791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 17887078 - 17887122
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| |||||||||||||| |||||    
T  17887078 tgccttagtgaatatgtctgcaagctgcagctcagtagagcaatg 17887122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 27552343 - 27552387
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| |||||||||||||| |||||    
T  27552343 tgccttagtgaatatgtctgcaagctgcagctcagtagagcaatg 27552387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 30647565 - 30647445
Alignment:
Q  58 gtgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatctaaacaaacataacaaact-tagctagat---ta 153  Q
    ||||||||||| |||| |||  ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||  |||||| |   ||    
T  30647565 gtgaaaagtgattacaacatgccttatataagaggcttatttacat-gcttggttagtaagctatctaaacaaacataaccaactcaagctagctctcta 30647467  T
Q  154 tctaactaacttgtaacaaact 175  Q
     |||||||||||||||||||||    
T  30647466 actaactaacttgtaacaaact 30647445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 30642748 - 30642631
Alignment:
Q  58 gtgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatctaaacaaacataacaaact-tagctagattatct 156  Q
    ||||||||||| |||| |||  ||||||||||| |||||||||| | |||||  |||||| ||||||||||||||||||| ||||  | |||| || |||    
T  30642748 gtgaaaagtgattacagcatgccttatataagaggcttatttaccttgcttgcatagtaaactatctaaacaaacataaccaactcaatctag-ttctct 30642650  T
Q  157 aactaacttgtaacaaact 175  Q
    | |||||||||||||||||    
T  30642649 agctaacttgtaacaaact 30642631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 51866548 - 51866588
Alignment:
Q  135 aacaaacttagctagattatctaactaacttgtaacaaact 175  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  51866548 aacaaacttagctagatcatctaactaacttgtaacaaact 51866588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 26315937 - 26315893
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||    
T  26315937 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatg 26315893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 43592037 - 43592098
Alignment:
Q  233 aacctttcaatcttaactgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    ||||| |||| ||| | |||||||||||||||||| | |||||| ||||||||||| |||||    
T  43592037 aacctgtcaaccttcaatgccttagtgaatatgtctgcaagttgtagctcagtagagcaatg 43592098  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 22931765 - 22931835
Alignment:
Q  105 gcttgtttagtaagctatctaaacaaacataacaaacttagctagattatctaactaacttgtaacaaact 175  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||| || | || ||| ||||||||||||||    
T  22931765 gcttgcttagtaagcaatctaaacaaacttaacaaacttagctacatcacctgactcacttgtaacaaact 22931835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 36082763 - 36082722
Alignment:
Q  134 taacaaacttagctagattatctaactaacttgtaacaaact 175  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  36082763 taacaaacttagctagatcacctaactaacttgtaacaaact 36082722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 54167577 - 54167621
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||    
T  54167577 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatg 54167621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 1299318 - 1299260
Alignment:
Q  7 gagagaagaaagagaatattaattgttgtaatcttatgagttttattaattgtgaaaagt 66  Q
    ||||| |||||||||| |||| ||||||||||||||||||||| |||| | |||||||||    
T  1299318 gagaggagaaagagaagatta-ttgttgtaatcttatgagtttcattagtagtgaaaagt 1299260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 21850123 - 21850079
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| |||||||||||||| |||||    
T  21850123 tgccttagtgaatatgtctgcaagctgcagctcagtagagcaatg 21850079  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 59575 - 59642
Alignment:
Q  134 taacaaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatat 201  Q
    ||||||||||||| |||||  ||||||||||||||||||| ||||| ||||| | ||||||| |||||    
T  59575 taacaaacttagcaagatttcctaactaacttgtaacaaatttttatacccccacatgtatattatat 59642  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 7468129 - 7468170
Alignment:
Q  134 taacaaacttagctagattatctaactaacttgtaacaaact 175  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  7468129 taacaaacttagctaggtcatctaactaacttgtaacaaact 7468170  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 36674975 - 36674931
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||    
T  36674975 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatg 36674931  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 8055316 - 8055272
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||  ||||||||||||||||||||    
T  8055316 tgccttagtgaatatgtctgcaaactgcagctcagtagaacaatg 8055272  T

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Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 45098 - 45142
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||    
T  45098 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatg 45142  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 7940316 - 7940360
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||    
T  7940316 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatg 7940360  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 27761321 - 27761277
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| |||||||||||||| |||||    
T  27761321 tgccttagtgaatatgtctgcaagctgcagctcagtagagcaatg 27761277  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 7099607 - 7099651
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||    
T  7099607 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatg 7099651  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 12023213 - 12023169
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||    
T  12023213 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatg 12023169  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 16798593 - 16798549
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||    
T  16798593 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatg 16798549  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 37681960 - 37681916
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||    
T  37681960 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatg 37681916  T

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Target: scaffold0440 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 2904 - 2860
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| | ||||||||||||||||||    
T  2904 tgccttagtgaatatgtctgcaagcttcagctcagtagaacaatg 2860  T

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Target: scaffold0440; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 7430 - 7386
Alignment:
Q  250 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 294  Q
    |||||||||||||||||| | ||| | ||||||||||||||||||    
T  7430 tgccttagtgaatatgtctgcaagctacagctcagtagaacaatg 7386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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