View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4749_low_4 (Length: 318)
Name: NF4749_low_4
Description: NF4749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4749_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 27096728 - 27097018
Alignment:
| Q |
18 |
attccttgatcatagatgaattttggaaatacaactatagagaagctgtgatgctgatgtgtatagccgacccaacattgtgccactgccaacgtagaga |
117 |
Q |
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| T |
27096728 |
attccttgatcatagatgaattttggaaatacaactatagagaagctgtgatgctgatgtgtatagccgacccaacattgtgccactgccaacgtagaga |
27096827 |
T |
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| Q |
118 |
cgcaaacaaagatccaaagtagcgtaagcatcaaacacttcacctctcccttttaatccaacgttccttattcattccttatacccaccacttttaatct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27096828 |
cgcaaacaaagatccaaagtagcgtaagcatcaaacacttcacctctcccttttaatccaacgttccttattcattccttatacccaccacttttaatct |
27096927 |
T |
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| Q |
218 |
ccaccctccatttaactctaccatctatattttattcatcctttgtcttcttagtcttaccttcttctgtcttgttcaattcttagttcat |
308 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27096928 |
ccaccctccatttaactctaccacctatattttattcatcctttgtcttcttagtcttaccttcttctgtcttgttcaattcttagttcat |
27097018 |
T |
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