View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4750-Insertion-1 (Length: 1014)
Name: NF4750-Insertion-1
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4750-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 668; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 8 - 695
Target Start/End: Complemental strand, 31863715 - 31863029
Alignment:
| Q |
8 |
gtctctacgtcttttctctgcttgactatgactcttggaagcacttgctgctctatcttcaacactaccttcaataggtaaattccatgactgaaattca |
107 |
Q |
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| T |
31863715 |
gtctctacgtcttttctctgcttgactatgactcttggaagcacttgctgctctatcttcaacactaccttcaataggtaaattccatgactgaaattca |
31863616 |
T |
|
| Q |
108 |
ctatattgaaaagaaccagaagaagagtcagagatattatgaggtaatatctgtgtaggtacagtcacaggaaattgtgaatgatcattactgtattgag |
207 |
Q |
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| T |
31863615 |
ctatattgaaaagaaccagaagaagagtcagagatattatgaggtaatatctgtgtaggtacagtcacaggaaattgtgaatgatcattactgtattgag |
31863516 |
T |
|
| Q |
208 |
accagtttgtgctcaaatgctgccactcagaagaatcattgtagttttccatactcatccaattattcttctaaactttcttcaatgaggtttttattat |
307 |
Q |
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| T |
31863515 |
accagtttgtgctcaaatgctgccactcagaagaatcattgtagttttccatactcatccaattattcttctaaactttcttcaatgaggtttttattat |
31863416 |
T |
|
| Q |
308 |
ctctatccaatgttactgtttgttgcactatgcattgataataatgagtgaccttcttcttatcttgatggtgattggtgagtgataagcaattaccttt |
407 |
Q |
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| T |
31863415 |
ctctatccaatgttactgtttgttgcactatgcattgataataatgagtgaccttcttcttatcttgatggtgattggtgagtgataagcaattaccttt |
31863316 |
T |
|
| Q |
408 |
gattagtcaaaatgaaaatcaattttggccttatctttctgtcaattcatggagacatttttatttttccatttaataaatttaacgaacttaattggac |
507 |
Q |
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| T |
31863315 |
gattagtcaaaatgaaaatcaattttggccttatctttctgtcaattcatggagacatttttatttttccatttaataaatttaacgaacttaattggac |
31863216 |
T |
|
| Q |
508 |
ttttataggagaggaaataaagagcaaaagaacaagaatgaggtggctaacttagagtgtacggacatgattatttttatgtggttcaactcaatctcaa |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31863215 |
ttttataggagaggaaataaagagcaaaagaacaagaatgaggtggctaacttagagtgtacggacatgattatttttatgtggttcaactcaatctcaa |
31863116 |
T |
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| Q |
608 |
ttgttggattaatctttaatactattaatttctaaactatttcattgaattaaactattgagcactgccaaaaaaaacactattgatc |
695 |
Q |
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| T |
31863115 |
ttgttggattaatctttaatagt-ttaatttctaaactatttcattgaattaaactattgagcactgcaaaaaaaaaaactattgatc |
31863029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 721 - 1014
Target Start/End: Complemental strand, 31863006 - 31862720
Alignment:
| Q |
721 |
attatcaaactaatgagattttgttgagtatggctgatagactgatagacgcataaaaggagtaagggacgagaaaaatgagctaacgcaactctcttcg |
820 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
31863006 |
attatcaaactaataagattttgttgagtatggctgatagac--------gcataagaggagtaagggacgagaaaaatgaactaacgctgctctcttcg |
31862915 |
T |
|
| Q |
821 |
tccctatcttcgcgtctctttagtaaaacttaatctaaattttaaaatgatatcgtagttattcaatatctattagatcatagttgtcaaatcattcaga |
920 |
Q |
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| T |
31862914 |
tccctatcttcgcgtctctttagtaaaacttaatctaaattttaaaataatatcgtagttattcaatatctattagatcatagttgtcgaatcattcaga |
31862815 |
T |
|
| Q |
921 |
tcacgcttc-aatgatgaatcgtaaacgtaggtaggttccaaagaaatagaatagtatatataaatagactaaagaagtactagtttaaactttt |
1014 |
Q |
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| T |
31862814 |
tcacgcttcaaatgatgaatcgtaaacgtgggtaggttccaaagaaataagatagtatatataaatagactaaagaagtactagtttaaactttt |
31862720 |
T |
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