View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4750-Insertion-10 (Length: 488)

Name: NF4750-Insertion-10
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4750-Insertion-10
NF4750-Insertion-10
[»] chr6 (3 HSPs)
chr6 (7-440)||(993776-994207)
chr6 (144-262)||(3482042-3482160)
chr6 (150-282)||(5724607-5724739)
[»] chr3 (4 HSPs)
chr3 (127-283)||(52364026-52364182)
chr3 (145-267)||(25359546-25359668)
chr3 (153-216)||(52141228-52141291)
chr3 (152-216)||(34331686-34331750)
[»] chr8 (7 HSPs)
chr8 (150-216)||(16972041-16972107)
chr8 (150-283)||(32927867-32928000)
chr8 (157-260)||(10982279-10982382)
chr8 (152-216)||(32736504-32736568)
chr8 (145-219)||(35495299-35495373)
chr8 (137-219)||(38868782-38868864)
chr8 (175-248)||(26100148-26100221)
[»] chr5 (6 HSPs)
chr5 (142-262)||(42858104-42858224)
chr5 (167-260)||(9818732-9818826)
chr5 (168-269)||(31906248-31906349)
chr5 (169-281)||(18851078-18851190)
chr5 (154-260)||(6951286-6951392)
chr5 (169-217)||(10898762-10898810)
[»] chr1 (5 HSPs)
chr1 (164-260)||(1514341-1514437)
chr1 (166-253)||(7524118-7524205)
chr1 (175-262)||(7790644-7790731)
chr1 (164-251)||(11049257-11049344)
chr1 (150-195)||(10889518-10889563)
[»] chr4 (6 HSPs)
chr4 (150-283)||(35065038-35065171)
chr4 (127-219)||(39386672-39386764)
chr4 (80-265)||(53713472-53713653)
chr4 (199-262)||(30357508-30357571)
chr4 (150-260)||(20718615-20718725)
chr4 (163-267)||(33347160-33347264)
[»] chr2 (3 HSPs)
chr2 (144-245)||(11504033-11504133)
chr2 (142-195)||(38074472-38074525)
chr2 (175-237)||(33502258-33502320)
[»] chr7 (1 HSPs)
chr7 (175-260)||(22195862-22195947)


Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Complemental strand, 994207 - 993776
Alignment:
Q  7 atatttagattgtgttataatcgaggttaagttcgaaaaagtgtatcatagtagtatgtgtttga-tggactgtaagaattgattttgatatagttgatt 105  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||     ||||||||||||| ||||  |||||||||||||||||||||||||||     
T  994207 atatttagattgtgttataattgaggttaagttcgaaaaagtgtatc---cgagtatgtgtttgattggatcgtaagaattgattttgatatagttgatg 994111  T
Q  106 cagtaaaattgatttcactaattaaaagtggttttaactaaaattgatttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgttt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  994110 cagtaaaattgatttcactaattaaaagtggttttaactaaaactgatttgtatttaaatacattcatataaaagtgaattgaacaataactatatgttt 994011  T
Q  206 aaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaaattaattcttgaggtatgatcaattctactacacagaaataaaatatgttag 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  994010 aaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaaattaattcttgaggtataatcaattctactacacagaaataaaatatgttag 993911  T
Q  306 aattaactgtgatccctttagaagtaaaaccaaaaatacacttagctaattgattttttaacaaaggttagttgatatgcaaagggtttgaactttgaag 405  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  993910 aattaactgtgatccctttagaagtaaaaccaaacatacacttagctaattgattttttaacaaaggttaattgatatccaaagggtttgaactttgaag 993811  T
Q  406 caagatgatcctcttactccatttctttgaaatat 440  Q
    |||||||||||||||||||||||||||| ||||||    
T  993810 caagatgatcctcttactccatttctttaaaatat 993776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 262
Target Start/End: Complemental strand, 3482160 - 3482042
Alignment:
Q  144 taaaattgatttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataac 243  Q
    ||||| |||||||| ||| ||||||||||| ||||||| | |||||| ||||   ||||| | |||||||||| ||  |||||| | || ||||| ||||    
T  3482160 taaaagtgatttgtgtttgaatacattcatgtaaaagtaagttgaactataaacttgtgtgtgaaaatcaattctaaaatcaaaggctacaaatcttaac 3482061  T
Q  244 ttcaagtaaaattaattct 262  Q
    |||||||| ||| ||||||    
T  3482060 ttcaagtataatcaattct 3482042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 282
Target Start/End: Original strand, 5724607 - 5724739
Alignment:
Q  150 tgatttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaag 249  Q
    |||||||| ||| ||||  ||||||||||||||| || ||  |||  | ||||| |||||||||||||||  || |||||||| ||||| || |||||||    
T  5724607 tgatttgtgtttgaatatgttcatataaaagtgagttaaatgatatatttgtgtgtaaaaatcaattatagaataaaaagttacaaatcctagcttcaag 5724706  T
Q  250 taaaattaattcttgaggtatgatcaattctac 282  Q
    || ||| |||| | |||| |  |||||||||||    
T  5724707 tagaatcaattttggaggcaaaatcaattctac 5724739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 283
Target Start/End: Complemental strand, 52364182 - 52364026
Alignment:
Q  127 ttaaaagtggttttaactaaaattgatttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaa 226  Q
    ||||||||  || ||| |||||||||||||| ||||||||  || || ||||||||| ||||||  ||| | | ||||| |||||||||||||  |||||    
T  52364182 ttaaaagtaattctaattaaaattgatttgtgtttaaataattttatgtaaaagtgagttgaactgtaaatttatgtttgaaaatcaattatagaatcaa 52364083  T
Q  227 aagttaaaaatcataacttcaagtaaaattaattcttgaggtatgatcaattctact 283  Q
    ||| || |||||||| ||||||||| ||  |||||| || | ||||| |||||||||    
T  52364082 aagctataaatcatagcttcaagtagaaacaattctcgatgcatgattaattctact 52364026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 145 - 267
Target Start/End: Original strand, 25359546 - 25359668
Alignment:
Q  145 aaaattgatttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataact 244  Q
    |||| |||||||| |||  ||||||||||||| |||||| || |||||||| ||||||| | |||||||||||||  || ||||  || ||||  |||||    
T  25359546 aaaagtgatttgtgtttggatacattcatatagaagtgattttaacaataaatatgtgtgtgaaaatcaattatagaataaaaaactacaaattctaact 25359645  T
Q  245 tcaagtaaaattaattcttgagg 267  Q
    ||||||| ||| |||||| ||||    
T  25359646 tcaagtagaatcaattctggagg 25359668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 52141228 - 52141291
Alignment:
Q  153 tttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaatt 216  Q
    ||||| ||||||||||||||||||||||||| |||||| |||| ||||||| | ||||| ||||    
T  52141228 tttgtgtttaaatacattcatataaaagtgagttgaactataattatgtgtgtgaaaattaatt 52141291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 34331750 - 34331686
Alignment:
Q  152 atttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaatt 216  Q
    |||||| ||| |||||||| ||||||||||||||||||   ||||| | ||| ||||||||||||    
T  34331750 atttgtgtttgaatacatttatataaaagtgaattgaattttaactttatgtctaaaaatcaatt 34331686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 16972041 - 16972107
Alignment:
Q  150 tgatttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaatt 216  Q
    |||||||| ||| ||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||    
T  16972041 tgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaatt 16972107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 283
Target Start/End: Complemental strand, 32928000 - 32927867
Alignment:
Q  150 tgatttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaag 249  Q
    |||||||| |||  |||||||||| ||||||||| |||||| |||| | ||||| ||||||| |||| ||| |||||||| || ||||| || |||||||    
T  32928000 tgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaag 32927901  T
Q  250 taaaattaattcttgaggtatgatcaattctact 283  Q
    || ||| || | |||||| |  ||||||||||||    
T  32927900 tagaatcaactattgaggcaaaatcaattctact 32927867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 10982382 - 10982279
Alignment:
Q  157 tatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaaatt 256  Q
    |||||||||||||||||||||||||||||| ||| |||| | | | | | |||||||||| ||| |||| || ||| |||| ||||||||||||| |||     
T  10982382 tatttaaatacattcatataaaagtgaattaaactataagtctatatgtgaaaatcaattttataatcataaattataaattataacttcaagtagaatc 10982283  T
Q  257 aatt 260  Q
    ||||    
T  10982282 aatt 10982279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 32736568 - 32736504
Alignment:
Q  152 atttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaatt 216  Q
    |||||||||| ||||||||||| |||||||||||||||| |||| | ||||| ||||||| ||||    
T  32736568 atttgtatttgaatacattcatgtaaaagtgaattgaactataaatttgtgtgtaaaaattaatt 32736504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 35495373 - 35495299
Alignment:
Q  145 aaaattgatttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattata 219  Q
    ||||||||||| | |||  ||||||||| |||||||||| ||||||||||| | || || |||||||||||||||    
T  35495373 aaaattgatttatgtttggatacattcaaataaaagtgatttgaacaataaatttgagtataaaaatcaattata 35495299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 38868864 - 38868782
Alignment:
Q  137 ttttaactaaaattgatttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattata 219  Q
    |||| |||||||||||||| ||||| ||||| ||||| ||||||||| | |||| |||| | ||||  | |||||||||||||    
T  38868864 ttttcactaaaattgatttatatttgaatacgttcatgtaaaagtgagtagaactataaatttgtgcgtgaaaatcaattata 38868782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 26100148 - 26100221
Alignment:
Q  175 taaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaa 248  Q
    ||||||||| |||||| |||| | ||||| |||||||||||||||  |||||||| || ||||| || ||||||    
T  26100148 taaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaa 26100221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 262
Target Start/End: Complemental strand, 42858224 - 42858104
Alignment:
Q  142 actaaaattgatttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcata 241  Q
    ||||||| |||| ||| ||| |||| |||||| ||||||||| |||||| |||| | ||||| | |||||||||||||  || ||||| |  ||||| ||    
T  42858224 actaaaagtgatctgtgtttgaataaattcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatccta 42858125  T
Q  242 acttcaagtaaaattaattct 262  Q
    |||||||||||||| ||||||    
T  42858124 acttcaagtaaaatcaattct 42858104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 9818826 - 9818732
Alignment:
Q  167 cattcatataaaagtgaattgaacaataactatgtgttta-aaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaaattaatt 260  Q
    ||||||||||||||||| |||||| |||| | |||||||| |||||||||| ||  |||||||| || |||||||| ||||||||| ||| ||||    
T  9818826 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 9818732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 269
Target Start/End: Complemental strand, 31906349 - 31906248
Alignment:
Q  168 attcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaaattaattcttgagg 267  Q
    |||||| ||||||||| |||||| |||| | | | |  ||| ||||||||||| ||||||||||| |||||||| ||||||||||||| |||| | ||||    
T  31906349 attcatgtaaaagtgagttgaactataaatttatatgaaaatatcaattatataatcaaaagttacaaatcatagcttcaagtaaaatcaattatagagg 31906250  T
Q  268 ta 269  Q
    ||    
T  31906249 ta 31906248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 18851078 - 18851190
Alignment:
Q  169 ttcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaaattaattcttgaggt 268  Q
    ||||| ||||||||| || ||| |||| ||||||| | |||||||||| ||| |||||||| || |||||||| ||||||||| ||| |||| | | | |    
T  18851078 ttcatgtaaaagtgagtttaactataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattatagggat 18851177  T
Q  269 atgatcaattcta 281  Q
    | |||||||||||    
T  18851178 aggatcaattcta 18851190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 6951286 - 6951392
Alignment:
Q  154 ttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaa 253  Q
    ||||||||  ||| |||||| |||||||||||||||  |||| | | ||| || ||||||||||||  |||||||| || ||||| |||||||||||| |    
T  6951286 ttgtatttggataaattcatgtaaaagtgaattgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtaga 6951385  T
Q  254 attaatt 260  Q
    || ||||    
T  6951386 atcaatt 6951392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 10898810 - 10898762
Alignment:
Q  169 ttcatataaaagtgaattgaacaataactatgtgtttaaaaatcaatta 217  Q
    ||||| ||||||||| ||||||||||| | ||||| |||||||||||||    
T  10898810 ttcatgtaaaagtgagttgaacaataaatttgtgtgtaaaaatcaatta 10898762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 1514437 - 1514341
Alignment:
Q  164 atacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaaattaatt 260  Q
    |||||||||| ||||| ||| ||||||||||| | ||||| |||||||||||||||| || ||||| || ||||| || ||||||||| ||| ||||    
T  1514437 atacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagtagaataaatt 1514341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 7524205 - 7524118
Alignment:
Q  166 acattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaa 253  Q
    ||||| || ||||||||| |||||| |||| | ||||| |||||||||||| ||| |||||||| || ||||| ||||||||||||||    
T  7524205 acatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaaatcctaacttcaagtaaa 7524118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 7790644 - 7790731
Alignment:
Q  175 taaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaaattaattct 262  Q
    ||||||||| ||||||||||| | ||||| |||||||||||||||  ||| |||  || |||||||||||||||||| ||| ||||||    
T  7790644 taaaagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaattct 7790731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 11049344 - 11049257
Alignment:
Q  164 atacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaagta 251  Q
    |||||||||  ||||||||| |||||| |||| | ||||| |||||||||||| ||  |||||||| || ||||| || |||||||||    
T  11049344 atacattcacgtaaaagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagta 11049257  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 10889518 - 10889563
Alignment:
Q  150 tgatttgtatttaaatacattcatataaaagtgaattgaacaataa 195  Q
    |||||| ||||||||||||||||||||||| | | |||||||||||    
T  10889518 tgatttatatttaaatacattcatataaaaataagttgaacaataa 10889563  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 283
Target Start/End: Complemental strand, 35065171 - 35065038
Alignment:
Q  150 tgatttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaag 249  Q
    |||||||| |||  |||||||||| ||||||||| | ||   |||| | ||||| |||||||||||| ||  ||||||||| | ||||  || |||||||    
T  35065171 tgatttgtgtttggatacattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaattctagaatcaaaagtcacaaatactagcttcaag 35065072  T
Q  250 taaaattaattcttgaggtatgatcaattctact 283  Q
    |||||| |||| |||||| |  ||||||||||||    
T  35065071 taaaatcaattattgaggcaaaatcaattctact 35065038  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 39386764 - 39386672
Alignment:
Q  127 ttaaaagtggttttaactaaaattgatttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattata 219  Q
    ||||||||| |||| | ||||| || ||| | |||||||| |||||| ||||||||| ||||||  ||| ||||||| | |||||||||||||    
T  39386764 ttaaaagtgattttgattaaaagtggtttttgtttaaatatattcatgtaaaagtgagttgaactttaaatatgtgtgtgaaaatcaattata 39386672  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 265
Target Start/End: Original strand, 53713472 - 53713653
Alignment:
Q  80 aagaattgattttgatatagttgattcagtaaaattgatttcactaattaaaagtggttttaactaaaattgatttgtatttaaatacattcatataaaa 179  Q
    ||||||| ||||||||| | ||||||  |||||||||||||      ||||||||  |||| ||||||  | |||||| |||  | |||||||| |||||    
T  53713472 aagaattcattttgataaaattgattatgtaaaattgattttg----ttaaaagtaattttgactaaacataatttgtgtttggacacattcatgtaaaa 53713567  T
Q  180 gtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaaattaattcttga 265  Q
    |||| |||||| |||  ||| | | |  || |||||||||  |||||||| || ||||| || |||||||||||||||||||||||    
T  53713568 gtgagttgaactatatatatttatgtggaagtcaattatagaatcaaaagctacaaatcgtagcttcaagtaaaattaattcttga 53713653  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 30357571 - 30357508
Alignment:
Q  199 tgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaaattaattct 262  Q
    ||||| |||||||||||||||| |||||||| || |||||| | ||||||||| ||| ||||||    
T  30357571 tgtgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaattct 30357508  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 20718725 - 20718615
Alignment:
Q  150 tgatttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaag 249  Q
    |||||| |||||  ||||||| || ||||||| | |||||| |||| | |||||  ||||||||||| ||| || ||||| || ||||||||| |||||     
T  20718725 tgatttttatttggatacatttatttaaaagtaacttgaactataattttgtgtagaaaaatcaattttataattaaaagctacaaatcataaattcaaa 20718626  T
Q  250 taaaattaatt 260  Q
    |||||| ||||    
T  20718625 taaaatcaatt 20718615  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 267
Target Start/End: Original strand, 33347160 - 33347264
Alignment:
Q  163 aatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaaattaattct 262  Q
    |||||| |||| |||||||||||||||| |||  | |||||  |||||| ||||||   || |||| ||| ||||| || ||||||||| ||||||||||    
T  33347160 aatacaatcatgtaaaagtgaattgaactatatatttgtgtgcaaaaattaattatcgaataaaaaattacaaatcctaccttcaagtagaattaattct 33347259  T
Q  263 tgagg 267  Q
     ||||    
T  33347260 agagg 33347264  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 11504033 - 11504133
Alignment:
Q  144 taaaattgatttgtatttaaatacattcatataaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataac 243  Q
    ||||| |||||||| ||| ||||||||||| ||||||||| |||||| |||||| ||||| | |||| ||||| ||| |||||||  || ||||| ||||    
T  11504033 taaaagtgatttgtgttttaatacattcatgtaaaagtgagttgaactataactttgtgtgtgaaaa-caattctataatcaaaaactacaaatcctaac 11504131  T
Q  244 tt 245  Q
    ||    
T  11504132 tt 11504133  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 38074525 - 38074472
Alignment:
Q  142 actaaaattgatttgtatttaaatacattcatataaaagtgaattgaacaataa 195  Q
    ||||||| | ||||||||||||||||||| || ||||||||| |||||||||||    
T  38074525 actaaaagttatttgtatttaaatacatttatgtaaaagtgagttgaacaataa 38074472  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 33502320 - 33502258
Alignment:
Q  175 taaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaat 237  Q
    ||||||||| |||||| |||| ||||||| |||||||||||| ||  ||||||||||| ||||    
T  33502320 taaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaatcaaaagttacaaat 33502258  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 22195947 - 22195862
Alignment:
Q  175 taaaagtgaattgaacaataactatgtgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaaattaatt 260  Q
    |||||||||||| ||| |||| ||||  | | |||||||||| ||  ||||||||||| |||||||| ||| ||||||||| ||||    
T  22195947 taaaagtgaattaaactataaatatgcatgtgaaaatcaattttagaatcaaaagttacaaatcatagcttaaagtaaaatcaatt 22195862  T

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