View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4750-Insertion-11 (Length: 483)
Name: NF4750-Insertion-11
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4750-Insertion-11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Original strand, 46072163 - 46072621
Alignment:
| Q |
8 |
catagcagtgtataaacttaattaaattatatgcaaatattgaatgatattccttttgataaagaaaactggcagaacacatctacaaaataaaggaatc |
107 |
Q |
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| T |
46072163 |
catagcagtgtgtaaaattaattaaattatatgcaaatattgaatgatattccttttgataaagaaaactggcagaacacatctacaaaataaaggaatc |
46072262 |
T |
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| Q |
108 |
tatacaaatttttcatctttatttacaatgaaaaatatggcagcttaacagaaaatatatctcccacttcagtatagaggctgagagttgatatacccca |
207 |
Q |
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| T |
46072263 |
tatacaaatttttcatctttatttacaatgaaaaatatggcagcttaacagaaaatata-----------------gaggctgagagttgatatacccca |
46072345 |
T |
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| Q |
208 |
gctgattcgaacacggtttaaaatacctaaagttgcatcttcttcatttcatccgacaccttgagcacaaaatggttaaccaaacgagttataagaaccc |
307 |
Q |
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| T |
46072346 |
gctgattcgaacacggtttaaaatacctaaagttgcatcttcttcatttcatctgacaccttgagcacaaaatggttaaccaaacgagttataagaaccc |
46072445 |
T |
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| Q |
308 |
nnnnnnntcaatgcaattcatctatgtccttgtttatctgctgcaggcaaaggaagatcaattttctaaacattacactaactccttgtggcttttttgg |
407 |
Q |
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| T |
46072446 |
aaaaaaatcaatgcaattcatctatgtccctgtttatctgctgcaggcaaaggaagatcaattttctaaacattacactaactccttgtggcctttttgg |
46072545 |
T |
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| Q |
408 |
tatatatacaaatgtagccgaaaagggtaacaaacggatattaatcagcgtctgttgttctctttttcctcctgtg |
483 |
Q |
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| T |
46072546 |
tatatatacaaatgtagccgaaaagggtaacaaacggatattaatcagcgtctgttgttctctttttcctcctgtg |
46072621 |
T |
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