View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4750-Insertion-16 (Length: 347)
Name: NF4750-Insertion-16
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4750-Insertion-16 |
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| [»] chr1 (7 HSPs) |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 347
Target Start/End: Original strand, 51772268 - 51772607
Alignment:
| Q |
8 |
ttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattctt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772268 |
ttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattctt |
51772367 |
T |
|
| Q |
108 |
caagtgggtggagtggagaaagtgtttatgcggtattttagtgtgagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatctg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51772368 |
caagtgggtggagtggagaaagtgtttatgcggtattttagtgtgagtgaggacgagagcctgttgaaaatttcgcagtgttatctatccaccacatctg |
51772467 |
T |
|
| Q |
208 |
gtcctctagctggcctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtaggat |
307 |
Q |
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| T |
51772468 |
gccctctagccggtctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtaggat |
51772567 |
T |
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| Q |
308 |
ccgctataaggtaagtcccagattaatatacacaaaccta |
347 |
Q |
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| T |
51772568 |
ccgctataaggtaagtcccagattaatatacacaaaccta |
51772607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 51780134 - 51780438
Alignment:
| Q |
8 |
ttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattctt |
107 |
Q |
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| T |
51780134 |
ttctaatcctattttatataattctgaaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctt |
51780233 |
T |
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| Q |
108 |
caagtgggtggagtggagaaagtgtttatgcggtattttagtgtgagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatctg |
207 |
Q |
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| T |
51780234 |
taagtgggtggagtggataaattttttatgcactattttagtgtgagagag----------tgttgaaagtttctcactgttatctttccaccacatctg |
51780323 |
T |
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| Q |
208 |
gtcctctagctggcctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtaggat |
307 |
Q |
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| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
51780324 |
gccctctagctggcctcctcttcatctccaatgaaaaggttgccttttgcagtgacagatcaataaaagtctataatcagaaaggtcaaatgtgtaggat |
51780423 |
T |
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| Q |
308 |
ccgctataaggtaag |
322 |
Q |
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||||||||||||||| |
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| T |
51780424 |
ccgctataaggtaag |
51780438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 34 - 325
Target Start/End: Original strand, 51807869 - 51808160
Alignment:
| Q |
34 |
aaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtt |
133 |
Q |
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|||||||||| ||| || |||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
51807869 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagagaactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
51807968 |
T |
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| Q |
134 |
tatgcggtattttagtgtgagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatctggtcctctagctggcctcctcttcatc |
233 |
Q |
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|| || ||||||||||||| || | ||||| || | ||| |||| |||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
51807969 |
tacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcacagtgttatctatccaccacatctggtcctctagctggtctgctcttcatc |
51808068 |
T |
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| Q |
234 |
tccaatgagaaggttgccttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcc |
325 |
Q |
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| T |
51808069 |
tccaatgaaaaggttgccttctgcagtgagagatcaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgatataaggtatgtcc |
51808160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 52 - 324
Target Start/End: Original strand, 51803934 - 51804206
Alignment:
| Q |
52 |
gagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtttatgcggtattttagtgt |
151 |
Q |
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| T |
51803934 |
gagcaaacatatctaaaacaataaagaggacgttgaacttaggggctcaaattcttcaaatgggtggagtggagaaaatgtttaggcagtattttagtgt |
51804033 |
T |
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| Q |
152 |
gagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatctggtcctctagctggcctcctcttcatctccaatgagaaggttgcc |
251 |
Q |
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| T |
51804034 |
gagagaaggagagaggctatcaaaagtttcgcagtgttatctttccaccacatccggtcctctatctggtctcctcttcatctccaatgaaaaggtggcc |
51804133 |
T |
|
| Q |
252 |
ttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtc |
324 |
Q |
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|| |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51804134 |
ttctgcagtgagagaacaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtc |
51804206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 271
Target Start/End: Complemental strand, 12196221 - 12196136
Alignment:
| Q |
186 |
tgttatctatccaccacatctggtcctctagctggcctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaat |
271 |
Q |
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| T |
12196221 |
tgttatctatcaacaacatctggtcctctagcaggcctactcttcatatcaactaataaaattgccttttgtagtgagagatcaat |
12196136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 51766475 - 51766421
Alignment:
| Q |
183 |
cagtgttatctatccaccacatctggtcctctagctggcctcctcttcatctcca |
237 |
Q |
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| T |
51766475 |
cagtgttacctatcaaccacatcaggtcttatagctggcctcctcttcatttcca |
51766421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 51761423 - 51761472
Alignment:
| Q |
162 |
gagagtctgttgaaaatttcgcagtgttatctatccaccacatctggtcc |
211 |
Q |
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| T |
51761423 |
gagaggctgttgaaagtttcacactgttatctgtccaccacatctggtcc |
51761472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 6776 - 7082
Alignment:
| Q |
8 |
ttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattctt |
107 |
Q |
| |
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||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||||| | ||| || ||||||||||||||| |||||||| |
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| T |
6776 |
ttctaatcctattttatataattctgaaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctt |
6875 |
T |
|
| Q |
108 |
caagtgggtggagtggagaaagtgtttatgcggtattttagtgtgagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatctg |
207 |
Q |
| |
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|||||||||||||||| ||| | ||||||| |||||||||||||| ||| |||||||| |||| || |||||||| ||||||||||||| |
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| T |
6876 |
taagtgggtggagtggataaattttttatgcactattttagtgtgagagag----------tgttgaaagtttctcactgttatctttccaccacatctg |
6965 |
T |
|
| Q |
208 |
gtcct--ctagctggcctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtagg |
305 |
Q |
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| T |
6966 |
gcccctcctagctggcctcctcttcatctccaatgaaaaggttgccttttgcagtgacagatcaataaaagtctataatcagaaaggtcaaatgtgtagg |
7065 |
T |
|
| Q |
306 |
atccgctataaggtaag |
322 |
Q |
| |
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||||||||||||||||| |
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| T |
7066 |
atccgctataaggtaag |
7082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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