View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4750-Insertion-17 (Length: 210)
Name: NF4750-Insertion-17
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4750-Insertion-17 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 38014098 - 38013896
Alignment:
| Q |
8 |
aattttaccacacagattattgtagctcacattaaactccttcaaaagctccagcttcgcaaatcccacaggtagcgtaccgtagattttattgttactc |
107 |
Q |
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| T |
38014098 |
aattttaccacacagattattgtagctcacattaaactccttcaaaagctccagcttcgcaaatcccacaggtagcgtaccgtagattctattgttactc |
38013999 |
T |
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| Q |
108 |
aaatccaccgactccaaattcttggacagcccaaccttcccgatatcaaaagacagcaagttcctatgcaaccatattacatgatttcctttcttggatc |
207 |
Q |
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| T |
38013998 |
aaatccaccgactccaaattcttggacagcccaaccttcccgatatcaaaagacagcaagttcctatgcaaccatattacattattttctttcttggacc |
38013899 |
T |
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| Q |
208 |
cga |
210 |
Q |
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||| |
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| T |
38013898 |
cga |
38013896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 37697046 - 37697191
Alignment:
| Q |
14 |
accacacagattattgtagctcacattaaactccttcaaaagctccagcttcgcaaatcccacaggtagcgtaccgtagattttattgttactcaaatcc |
113 |
Q |
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| T |
37697046 |
accacacaaactattgtagctcacattaaattcactcaaaaacttcagcttcctcaatcccttaggtagcgtaccatagattttattgttcctcaaatcc |
37697145 |
T |
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| Q |
114 |
accgactccaaattcttggacagcccaaccttcccgatatcaaaag |
159 |
Q |
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| T |
37697146 |
acagtctccaaatgcttcgacagcccaactttcccaatatcaaaag |
37697191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 37996301 - 37996250
Alignment:
| Q |
15 |
ccacacagattattgtagctcacattaaactccttcaaaagctccagcttcg |
66 |
Q |
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| T |
37996301 |
ccacacaaattattattgctcacattaaactccttcaaaagtttcagcttcg |
37996250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 25326983 - 25326827
Alignment:
| Q |
14 |
accacacagattattgtagctcacattaaactccttcaaaagctccagcttcgcaaatcccacaggtagcgtaccgtagattttattgttactcaaatcc |
113 |
Q |
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|||||||| ||||||||||||||| ||||| || |||||| || ||||| | | |||| |||||||| ||||||||||||||| || || | || | |
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| T |
25326983 |
accacacaaattattgtagctcacgttaaagtcactcaaaaccttgagctttgtcagtcccttaggtagcgcaccgtagattttatttttgcttagattc |
25326884 |
T |
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| Q |
114 |
accgactccaaattcttggacagcccaaccttcccgatatcaaaagacagcaagttc |
170 |
Q |
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| T |
25326883 |
agcaacgtcaaattctttggcagcccaactttcccaatatcaaaagacagcatgttc |
25326827 |
T |
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