View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4750-Insertion-3 (Length: 715)
Name: NF4750-Insertion-3
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4750-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 7 - 707
Target Start/End: Original strand, 38954328 - 38955034
Alignment:
| Q |
7 |
actattcttgtgagtacttttccttcaagggcgtaactgttgcaataccttggtgtggcatgaaaacagatagacgtggctgtagaattaacttttctca |
106 |
Q |
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| T |
38954328 |
actattcttgtgagtacttttccttcaagggtgtaactgttgcaataccttggtgtggcatgaaaacagatagacgtggctgtagaattaacttttctca |
38954427 |
T |
|
| Q |
107 |
ctattctccggaagcaaaaagcaagctagaggttgcttctgaggttagagatacagaacgattttctcttggtaattggttcttcattgatggtacatgc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38954428 |
ctattctccggaagcaaaaagcaagctagaggttgcttctgaggttagagatacagaacgattttctcttggtaattggttcttcattgatggtacatgc |
38954527 |
T |
|
| Q |
207 |
cgaggttctacttctatgacatggcctgaggagaaacttccaacatgggatttacctcttgtagaagatgaatgtgatcatcaaaatttatgtcacgaag |
306 |
Q |
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| T |
38954528 |
cgaggttctacttctatgacatggcctgaggagaaacttccaacatgggatttacctcttgtagaagatgaatgtgatcatcaaaatttatgtcacgaag |
38954627 |
T |
|
| Q |
307 |
atagtagccatggaaggaatatatcagaaacatggggtctaacaatagtagcagctggcagtgatggaactatcaggacattccacaattttggcttgcc |
406 |
Q |
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| T |
38954628 |
atagtagccatggaaggaatatatcagaaacatggggtctaacaatagtagcagctggcagtgatggaactatcaagacattccacaattttggcttgcc |
38954727 |
T |
|
| Q |
407 |
tgttaggctctaggacaatgccatgttggttgttttcaatttttcatgacaagttttggc-------aggtgtaaattttcacgtggcggccttagattc |
499 |
Q |
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| T |
38954728 |
tgttaggctctaggacaatgccatgttgattgttttcaatttttcatgagaagttttggctcggtaaaggtgtaaattttcacgtggtggccttagattc |
38954827 |
T |
|
| Q |
500 |
taagtataataagttgcttagaattatggaaggtggatttgaagctcgtggttgtatcatctgcgtacaggtaaaatcactgtcaaatccgtgttggatg |
599 |
Q |
| |
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| T |
38954828 |
taagtataataagttgcttagaattatggaaggtggatttgaagcttgtggttgtatcatctgcgtacaggtaaaatcactgtcaaatccgtgttggatg |
38954927 |
T |
|
| Q |
600 |
tcaagttcttgacagattccaggatttctatatttacactttaggtatgccttcaattcaatatggttctggtgggaagatttaggccacaggccatgcg |
699 |
Q |
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| T |
38954928 |
tcaagttcttgacagattccaggatttctatatttacactttaggtatgccttcaattcaatatggttcgggt-ggaaaatttaggccacaggccatgca |
38955026 |
T |
|
| Q |
700 |
aagaatcc |
707 |
Q |
| |
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| T |
38955027 |
aagaatcc |
38955034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 279
Target Start/End: Original strand, 43763795 - 43763906
Alignment:
| Q |
162 |
gaacgattttctcttggtaattggttcttcattgatggtacatgccgaggttctacttctatgacatggcctgaggagaaacttccaacatgggatttac |
261 |
Q |
| |
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||||| |||||| |||||| |||||||| |||||||||| |||||||||| ||||||||||||||| || ||||||||||| | ||||||| || |
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| T |
43763795 |
gaacgtttttcttttggtagttggttctccattgatggttcatgccgagg------ttctatgacatggcccgaagagaaacttcccagttgggattcac |
43763888 |
T |
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| Q |
262 |
ctcttgtagaagatgaat |
279 |
Q |
| |
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||||| ||||| ||||| |
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| T |
43763889 |
ctctttcagaagttgaat |
43763906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 43763659 - 43763717
Alignment:
| Q |
11 |
ttcttgtgagtacttttccttcaagggcgtaactgttgcaataccttggtgtggcatga |
69 |
Q |
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|||||||||||||||| || |||||| || ||||||||||||||||||| ||||||| |
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| T |
43763659 |
ttcttgtgagtactttcgctccaagggggttactgttgcaataccttggtcaggcatga |
43763717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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