View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4750-Insertion-4 (Length: 711)
Name: NF4750-Insertion-4
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4750-Insertion-4 |
 | |
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| [»] chr4 (2 HSPs) |
| |
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| [»] chr8 (4 HSPs) |
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|
Alignment Details
Target: chr4 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 8 - 711
Target Start/End: Complemental strand, 28730826 - 28730120
Alignment:
| Q |
8 |
ttgtcaatcgccgatcttgagaagcttccagttggaactgctctgc-tacattggagcgaggtcagccgcttctgatcactacttctggtggaggagtga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28730826 |
ttgtcaatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtga |
28730727 |
T |
|
| Q |
107 |
cattagcaccgatgagaattaactatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgca |
206 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730726 |
cattagcaccgatgaggattaactatgttagggtgaaggttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgca |
28730627 |
T |
|
| Q |
207 |
tatcaatcctattggggctgcttatgatactatcttaggag---------catcggaaggagcaggtgtcggagccagagctgctactgtttcagattct |
297 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
28730626 |
tatcaatcctattgcggatgcttatgatactatcttaggaggtgaaggagcatcggaaggagcaggtgtcggagccagagctgctactgtatcagattct |
28730527 |
T |
|
| Q |
298 |
gctggtcaggcgacggaagaaacctgctctgcccttgatgagcgtggtggttgtgctgctgatgtcactgctgcaacaggtgtgtctcctatgcctcagg |
397 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28730526 |
gctggtcaggcgactgaagaaacctgctctgctcttgatgggcgtggtggctgtgctgctgatgtcactgctgcaacaggtgtgtctcccatgcctcagg |
28730427 |
T |
|
| Q |
398 |
tcaggccaatgattgagattgaagatcaccatggcctgtgagtgtgatggttcgatgatgacgaagattgcgatttacttcattctctgctgaagtaaaa |
497 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28730426 |
tcaggccaatgtttgagattgaagatcaccatggcctgtgagtgtgatggtttgatcatgacgaagattgcgatttacttctttctctgctgaagtaaaa |
28730327 |
T |
|
| Q |
498 |
ctatatgaaatttgtcgttaataagtttacactgttgttcatctaatgtagctaattcacaccgttgcttagttctttttagtttgtgctgcacttcttt |
597 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730326 |
ctatatgaaatttgtagttaataagtttacaccgttgttcatctaatgtagctaattcacaccgttgcttagttctttttagtttgtgctgcacttcttt |
28730227 |
T |
|
| Q |
598 |
gtctcatgaattgtaactctgaatttgtagttagttcacactattatccatatatactctatgttgcttaactagttcgttaataaaacaatttgtggat |
697 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
28730226 |
gtctcatgaagtgaaactctgaatttgtagttaattcacactattatccatatatactctatgttgcttaactagttcgttaataa-------tgtggat |
28730134 |
T |
|
| Q |
698 |
ttagtctttacaga |
711 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28730133 |
ttagtctttacaga |
28730120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 539
Target Start/End: Original strand, 33078556 - 33078592
Alignment:
| Q |
503 |
tgaaatttgtcgttaataagtttacactgttgttcat |
539 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33078556 |
tgaaatttgtagttaataagtttacactgttgttcat |
33078592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 8 - 711
Target Start/End: Complemental strand, 38121252 - 38120538
Alignment:
| Q |
8 |
ttgtcaatcgccgatcttgagaagcttccagttggaactgctctgc-tacattggagcgaggtcagccgcttctgatcactacttctggtggaggagtga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
38121252 |
ttgtcaatcgccgatcttgagaagcttccggttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtga |
38121153 |
T |
|
| Q |
107 |
cattagcaccgatgagaattaactatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgca |
206 |
Q |
| |
|
||| ||| |||||||| ||||||||||| || || ||| |||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
38121152 |
catcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatttgccttttccgca |
38121053 |
T |
|
| Q |
207 |
tatcaatcctattggggctgcttatgatactatcttaggag---------catcggaaggagcaggtgtcggagccagagctgctactgtttcagattct |
297 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38121052 |
tatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagattct |
38120953 |
T |
|
| Q |
298 |
gctggtcaggcgacggaagaaacctgctctgcccttgatgagcgtggtggttgtgctgctgatgtcactgctgcaacaggtgtgtctcctatgcctcagg |
397 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
38120952 |
gctggtcaggccacggaagaaacctgctctgctcctgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctcagg |
38120853 |
T |
|
| Q |
398 |
tcaggccaatgattgagattgaagatcaccatggcctgtgagtgtgatggttcgatg---atgacgaagattgcgatttacttcattctctgctgaagta |
494 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||| |||| ||| |||||||||||||| |
|
|
| T |
38120852 |
tcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgatgaagattgcggtttagttctttctctgctgaagtg |
38120753 |
T |
|
| Q |
495 |
aaactatatgaaatttgtcgttaataagtttacactgttgttcatctaatgtagctaattcacaccgttgcttagttctttttagtttgtgctgcacttc |
594 |
Q |
| |
|
|| || |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
38120752 |
aatctctatgaaatttgtagttaataagtttacactgttgtccatctaatgtagctaattcacacggttccttagttctttttagtttgtgctgcacttc |
38120653 |
T |
|
| Q |
595 |
tttgtctcatgaattgtaactctgaatttgtagttagttcacactattatccatatatactctatgttgcttaactagttcgttaataaaacaatttgtg |
694 |
Q |
| |
|
||||||||||||| || |||| |||||||||||||| ||||||||||||||| | ||| ||||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
38120652 |
tttgtctcatgaagtgaaactttgaatttgtagttaattcacactattatcc--aactacactatgttgcttaaatagttcttcaataaaacaatttgtg |
38120555 |
T |
|
| Q |
695 |
gatttagtctttacaga |
711 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38120554 |
gatttagtctttacaga |
38120538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 528
Target Start/End: Original strand, 38608871 - 38609401
Alignment:
| Q |
8 |
ttgtcaatcgccgatcttgagaagcttccagttggaactgctctgc-tacattggagcgaggtcagccgcttctgatcactacttctggtggaggagtga |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
38608871 |
ttgtcgatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtga |
38608970 |
T |
|
| Q |
107 |
cattagcaccgatgagaattaactatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgca |
206 |
Q |
| |
|
||| ||| |||||||| ||||||||||| || || ||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38608971 |
catcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgca |
38609070 |
T |
|
| Q |
207 |
tatcaatcctattggggctgcttatgatactatctt---------aggagcatcggaaggagcaggtgtcggagccagagctgctactgtttcagattct |
297 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || |||||| ||||||||||||||||| |||||| |||| | ||| | | ||||||| |
|
|
| T |
38609071 |
tatcaatcctattgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattct |
38609170 |
T |
|
| Q |
298 |
gctggtcaggcgacggaagaaacctgctctgcccttgatgagcgtggtggttgtgctgctgatgtcactgctgcaacaggtgtgtctcctatgcctcagg |
397 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| || || ||||||||||||| |||||||||| |
|
|
| T |
38609171 |
ccaggtcaggcgacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcagg |
38609270 |
T |
|
| Q |
398 |
tcaggccaatgattgagattgaagatcaccatggcctgtgagtgtgatggttcgatgatgacgaagattgcgatttacttcattctctgctgaagtaaaa |
497 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |||| ||| |||||||||||||| || |
|
|
| T |
38609271 |
tcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaat |
38609370 |
T |
|
| Q |
498 |
ctatatgaaatttgtcgttaataagtttaca |
528 |
Q |
| |
|
|| |||||||||||| ||||||||||||||| |
|
|
| T |
38609371 |
ctctatgaaatttgtagttaataagtttaca |
38609401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 528
Target Start/End: Original strand, 38793654 - 38794184
Alignment:
| Q |
8 |
ttgtcaatcgccgatcttgagaagcttccagttggaactgctctgc-tacattggagcgaggtcagccgcttctgatcactacttctggtggaggagtga |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
38793654 |
ttgtcgatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtga |
38793753 |
T |
|
| Q |
107 |
cattagcaccgatgagaattaactatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgca |
206 |
Q |
| |
|
||| ||| |||||||| ||||||||||| || || ||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38793754 |
catcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgca |
38793853 |
T |
|
| Q |
207 |
tatcaatcctattggggctgcttatgatactatctt---------aggagcatcggaaggagcaggtgtcggagccagagctgctactgtttcagattct |
297 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || |||||| ||||||||||||||||| |||||| |||| | ||| | | ||||||| |
|
|
| T |
38793854 |
tatcaatcctattgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattct |
38793953 |
T |
|
| Q |
298 |
gctggtcaggcgacggaagaaacctgctctgcccttgatgagcgtggtggttgtgctgctgatgtcactgctgcaacaggtgtgtctcctatgcctcagg |
397 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| || || ||||||||||||| |||||||||| |
|
|
| T |
38793954 |
ccaggtcaggcgacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcagg |
38794053 |
T |
|
| Q |
398 |
tcaggccaatgattgagattgaagatcaccatggcctgtgagtgtgatggttcgatgatgacgaagattgcgatttacttcattctctgctgaagtaaaa |
497 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |||| ||| |||||||||||||| || |
|
|
| T |
38794054 |
tcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaat |
38794153 |
T |
|
| Q |
498 |
ctatatgaaatttgtcgttaataagtttaca |
528 |
Q |
| |
|
|| |||||||||||| ||||||||||||||| |
|
|
| T |
38794154 |
ctctatgaaatttgtagttaataagtttaca |
38794184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 374 - 483
Target Start/End: Original strand, 34592845 - 34592957
Alignment:
| Q |
374 |
caggtgtgtctcctatgcctcaggtcaggccaatgattgagattgaagatcaccatggcctgtgagtgtgatggttc---gatgatgacgaagattgcga |
470 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
34592845 |
caggtgtgtctcccgtgcctcgggtcaggccaatggttgagattgaagatcaccatggcctgtgagtgtgatgcttcaatgatgatgatgaagattgcgg |
34592944 |
T |
|
| Q |
471 |
tttacttcattct |
483 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
34592945 |
tttacttctttct |
34592957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 598
Target Start/End: Complemental strand, 3928143 - 3928106
Alignment:
| Q |
561 |
gttgcttagttctttttagtttgtgctgcacttctttg |
598 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
3928143 |
gttgcttagatctttttagtttgtgcagcacttctttg |
3928106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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