View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4750-Insertion-5 (Length: 679)
Name: NF4750-Insertion-5
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4750-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 12 - 679
Target Start/End: Original strand, 36128627 - 36129294
Alignment:
| Q |
12 |
tatcagattttgtaaaaacggaaagcttgaaaaagaagacaggaagttactttaatataatctaataatgaacaatggcatgcgatttcgcatattagag |
111 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||||||| |
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| T |
36128627 |
tatctgattttgtgaaaacggaaagcttgaaaaagaagacaggaagttactttaatataatccaataatggacaatggcatgcgattttgaatattagag |
36128726 |
T |
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| Q |
112 |
ctgatacatagaagtaaaatactaagcctacaaggaattcatcctgctgcaaggtgacactagcattattcatagcagtaatcataattcataaacaagt |
211 |
Q |
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| T |
36128727 |
ctgatacatagaagtaaaatactaaccctacaaggaattcttcctgctgcaaggtgacactagcatgattcatagcagtaatcataattcataaacaagt |
36128826 |
T |
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| Q |
212 |
agaagaacatagctagcatgaaaatattcaatattctgctaatatatgcaacaagagattctatgtacataggatatcaacaacacggtaagaattttag |
311 |
Q |
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| T |
36128827 |
agaagaacatagctagcatgaaaatattcaatattctgctaatatatgcaagaagagattctatgtacataggatatcaataacacagtaagaattttag |
36128926 |
T |
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| Q |
312 |
acatatatcggcattgcttagcaaattactcggatacataccattcatattggnnnnnnnatagcaatgtgcagcatcaacataagctgaggcagcttca |
411 |
Q |
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| T |
36128927 |
acatatatcggcattgcttagcaaattactcggatacataccattcatattggtttttttatagcaatgtgcagcatcaacataagctgaggcagcttca |
36129026 |
T |
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| Q |
412 |
tgcttgctttccaacttgaatcacaagacaacaacgatcatttcagggttaagagataattagaaacaaagtagctaacttcaaagaaagctaaactgag |
511 |
Q |
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| T |
36129027 |
tgcttgctttccaacttgaatcacaagacaacaacgatcatttcagggttaagagataattagaaacaaagtagctaacttcaaagaaagctaaactgag |
36129126 |
T |
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| Q |
512 |
tcaccttcacatggcaatttgccaacttaatgtaggttgatcccgctttatcccctgaaatggcatcaccaccaccaacaacaacaatttcagcctgatt |
611 |
Q |
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| T |
36129127 |
tcaccttcacatggcaatttgccaacttaatgtaggttgatcccgctttatcccctgaaatggcatcaccaccaccaacaacaacaatttcagcctgatt |
36129226 |
T |
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| Q |
612 |
ttattacacctaaaatgttattaacaactagaaagcatgtttaaaaaccaatacaccatacactatac |
679 |
Q |
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| T |
36129227 |
ttactacacctaaaatgttattaacaactagaaagcatgtttaaaaaccaatacaccatacactatac |
36129294 |
T |
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Back To:
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Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 32384020 - 32384072
Alignment:
| Q |
372 |
atagcaatgtgcagcatcaacataagctgaggcagcttcatgcttgctttcca |
424 |
Q |
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| T |
32384020 |
atagcaatgtgaagcatcaacataagcctgtgcagcctcatgcttgctttcca |
32384072 |
T |
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