View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4750-Insertion-7 (Length: 587)
Name: NF4750-Insertion-7
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4750-Insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 267 - 570
Target Start/End: Original strand, 19400807 - 19401108
Alignment:
| Q |
267 |
gtgtgagccacaaacgtcgaagttttcctctcaaatccatagcttctccgatcacaatcaattccatgaattcccatcaagtcattaagctaagcattct |
366 |
Q |
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| T |
19400807 |
gtgtgagccacaaacatcaaagttttcctctcaaatccatagcttctccgatcacaatcaattccatgaattcccatcaagtcattaagctaagcattct |
19400906 |
T |
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| Q |
367 |
tctcttcnnnnnnnnngttaattcctgttttgtttacttcatcaatttcatattattagagttggatttggagaatattgatgcacttgatagatctagg |
466 |
Q |
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| T |
19400907 |
tctcttcttttttt--gttaattcctgttttgtttacttcatcaatttcgtattattagagttggatttggagaattttgattcacttgacagatctagg |
19401004 |
T |
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| Q |
467 |
gttcaatatcttgcacattacttttcttcacttgaatttatttgactaattgattcgtctatatttagacttgagacttcaatttatttgactaattgat |
566 |
Q |
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| T |
19401005 |
gttcaatatcttgcacattacttttcttcacttgaatttatttgactaattgattcgtctatatttagacttgagacttgaatttatttgactaattgat |
19401104 |
T |
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| Q |
567 |
tcgt |
570 |
Q |
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|||| |
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| T |
19401105 |
tcgt |
19401108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 69 - 265
Target Start/End: Original strand, 19400586 - 19400782
Alignment:
| Q |
69 |
ctgaagaaagagtattnnnnnnntaaatactattgatagttaaactactcctttgcaacttcaaattgaccactaaaacaaatggtggcaaaataatggt |
168 |
Q |
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| T |
19400586 |
ctgaagaaagagtattaaaaaaataaatactattgatagttaaactactcctttgcaacttcaaattgaccactaaaacaaatggtggcaaaataatggt |
19400685 |
T |
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| Q |
169 |
agctaatcnnnnnnnnnnnnnngaaggaatggtagctaatcttatatattcatgtattgcctgtgaccctaaagttaaggtgccaaatattatggtg |
265 |
Q |
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| T |
19400686 |
agctaatcttttttttttttttgaaggaatggtagctaatcttatatattcatgtattgcctgtgaccctaaggttaaggtgccaaatattatggtg |
19400782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 496 - 538
Target Start/End: Original strand, 19401080 - 19401122
Alignment:
| Q |
496 |
acttgaatttatttgactaattgattcgtctatatttagactt |
538 |
Q |
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| T |
19401080 |
acttgaatttatttgactaattgattcgtctatatttagactt |
19401122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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