View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4750_high_3 (Length: 369)
Name: NF4750_high_3
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4750_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 39502095 - 39502444
Alignment:
| Q |
1 |
atcgaagaagagttggaggtacctgccatggctttttgttatcatctagcacaagtattatggttttaaactacggtcgctgaaattgcacttacatgta |
100 |
Q |
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| T |
39502095 |
atcgaagaagagttggaggtacctgccatggctttttgttatcatctaacacaagtattatggttttaaactacggtcgctgaaattgcacttacatgta |
39502194 |
T |
|
| Q |
101 |
cttcaacatccttcatactgcgagcgcaattgtggttgcatcctcgatttagaaccatgattcgtatgctattcccttcgtttatgattgcaagatgctt |
200 |
Q |
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| T |
39502195 |
cttcaacatccttcatactgcgagcgcaattgtggttgcatcctcgatttagaaccatgatttgtatgctattcccttcgtttatgattacaagatgctt |
39502294 |
T |
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| Q |
201 |
tgacattttttatttgtattaagaaaaattggtagtataattaatatatataaattgcatatgaaaattggattttatggctgcatccacatccaaatta |
300 |
Q |
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| T |
39502295 |
tgacattttttatttgtagtaagaaaaattggtagtgtaattaatatatataaattgcatatgaaaattggattttatggctgcatccacatccaaatta |
39502394 |
T |
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| Q |
301 |
agctcgctcttggagctttatatcacaacacattcaagatctttattgaa |
350 |
Q |
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| T |
39502395 |
agctcgctcttggagctttatatcacaacacattcaagatctttattgaa |
39502444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 24352616 - 24352649
Alignment:
| Q |
219 |
ttaagaaaaattggtagtataattaatatatata |
252 |
Q |
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| T |
24352616 |
ttaagaaaaattggtagtataattaatacatata |
24352649 |
T |
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