View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4750_high_6 (Length: 287)

Name: NF4750_high_6
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4750_high_6
NF4750_high_6
[»] chr2 (1 HSPs)
chr2 (1-287)||(16563969-16564255)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 16564255 - 16563969
Alignment:
Q  1 ctaaattattttacatagtatcaatgtagtacatcttcacaaatgttaagttgtcaaggttgaagaaatcacggtggcaccataattttgttacagtaat 100  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  16564255 ctaaattattttacatagtatcaatgtagtgcatcttcacaagtgttaagttggcaaggttgaagaaatcacggtggcactataattttgttacagtaat 16564156  T
Q  101 aatttaccatgattttataaattttactgttaattcaaacatacattaagtaattcatgatagaatttgtggctaggttagaactccacaagggtaaagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16564155 aatttaccatgattttataaattttactgttaattcaaacatacattaagtaattcatgatagaatttgtggctaggttagaactccacaagggtagagt 16564056  T
Q  201 aagcataattttattcatagtcattcattgaggttgaaggtttttcctaagttaaggtgaggtgccatctcctccgcataaattatt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16564055 aagcataattttattcatagtcattcattgaggttgaaggtttttcctaagttaaggtgaggtgccatctcctccgcataaattatt 16563969  T

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