View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4750_low_10 (Length: 238)

Name: NF4750_low_10
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4750_low_10
NF4750_low_10
[»] chr8 (2 HSPs)
chr8 (1-222)||(12833159-12833380)
chr8 (64-113)||(29342175-29342224)
[»] chr2 (3 HSPs)
chr2 (73-131)||(39567774-39567832)
chr2 (48-95)||(43965245-43965292)
chr2 (46-94)||(43808485-43808533)
[»] chr5 (4 HSPs)
chr5 (68-121)||(6938850-6938903)
chr5 (60-126)||(26516175-26516241)
chr5 (44-97)||(4991054-4991107)
chr5 (60-96)||(20982262-20982298)
[»] chr7 (1 HSPs)
chr7 (60-95)||(1431435-1431470)
[»] chr4 (2 HSPs)
chr4 (70-121)||(17823020-17823071)
chr4 (44-96)||(32920509-32920561)
[»] chr1 (2 HSPs)
chr1 (57-108)||(47885132-47885183)
chr1 (60-116)||(24263266-24263322)
[»] chr3 (1 HSPs)
chr3 (76-121)||(36587873-36587918)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 12833380 - 12833159
Alignment:
Q  1 aacaattatacgtaaacaatttaacttaatttgatcttgcatgataaaaattgctcattcataaacacttatatgataagcccttatgctataagctgtg 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12833380 aacaattatacgtaaacaatttaacttaatttgatcttgcgtgataaaaattgctcattcataaacacttatatgataagcccttatgctataagctgtg 12833281  T
Q  101 aattaaactgtttatcaaaaccgggctttatatagcaaattctatcaaggtaagtactaacggttacaatcaatcactaactaacataacagaaagtata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12833280 aattaaactgtttatcaaaaccgggctttatatagcaaattctatcaaggtaagtactaacggttacaatcaatcactaactaacataacagaaagtata 12833181  T
Q  201 agagagctgtcacgtagcttta 222  Q
    |||||||| |||| ||||||||    
T  12833180 agagagctatcacatagcttta 12833159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 29342224 - 29342175
Alignment:
Q  64 aacacttatatgataagcccttatgctataagctgtgaattaaactgttt 113  Q
    ||||||||||||||||| | ||||||||||||  || |||||||||||||    
T  29342224 aacacttatatgataagtcattatgctataagtagttaattaaactgttt 29342175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 39567832 - 39567774
Alignment:
Q  73 atgataagcccttatgctataagctgtgaattaaactgtttatcaaaaccgggctttat 131  Q
    ||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||| ||||    
T  39567832 atgataagcgcttatgcaataagctgtgaattaagctgtttatccaaaccgggccttat 39567774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 43965245 - 43965292
Alignment:
Q  48 aaattgctcattcataaacacttatatgataagcccttatgctataag 95  Q
    |||| ||| ||||||||||||||||||||||||  |||||||||||||    
T  43965245 aaatagcttattcataaacacttatatgataagtgcttatgctataag 43965292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 43808533 - 43808485
Alignment:
Q  46 aaaaattgctcattcataaacacttatatgataagcccttatgctataa 94  Q
    |||||| ||| || ||||||||||||||||||| || ||||||||||||    
T  43808533 aaaaatagcttatacataaacacttatatgatacgcgcttatgctataa 43808485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 6938850 - 6938903
Alignment:
Q  68 cttatatgataagcccttatgctataagctgtgaattaaactgtttatcaaaac 121  Q
    ||||||||||||||  |||||||||||||||  |||||||||||||||| ||||    
T  6938850 cttatatgataagcgtttatgctataagctgataattaaactgtttatccaaac 6938903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 26516241 - 26516175
Alignment:
Q  60 cataaacacttatatgataagcccttatgctataagctgtgaattaaactgtttatcaaaaccgggc 126  Q
    ||||| |||||||||||||||| ||||||||||||||  | ||||||  |||||||| |||| ||||    
T  26516241 cataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaactgggc 26516175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 4991054 - 4991107
Alignment:
Q  44 ataaaaattgctcattcataaacacttatatgataagcccttatgctataagct 97  Q
    |||||||| ||| || || ||||||||||||||||| | |||||||||||||||    
T  4991054 ataaaaatagcttatacacaaacacttatatgataatcgcttatgctataagct 4991107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 20982262 - 20982298
Alignment:
Q  60 cataaacacttatatgataagcccttatgctataagc 96  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  20982262 cataagcacttatatgataagcacttatgctataagc 20982298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 1431435 - 1431470
Alignment:
Q  60 cataaacacttatatgataagcccttatgctataag 95  Q
    |||||||||||||||||||||| |||||||||||||    
T  1431435 cataaacacttatatgataagcacttatgctataag 1431470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 17823071 - 17823020
Alignment:
Q  70 tatatgataagcccttatgctataagctgtgaattaaactgtttatcaaaac 121  Q
    ||||||||||||||||||||||| |||||  |||||| ||||||||| ||||    
T  17823071 tatatgataagcccttatgctatgagctgcaaattaagctgtttatccaaac 17823020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 32920509 - 32920561
Alignment:
Q  44 ataaaaattgctcattcataaacacttatatgataagcccttatgctataagc 96  Q
    |||||||| ||| || |||||||||||||||||||  |||| |||||||||||    
T  32920509 ataaaaatagcttatccataaacacttatatgatataccctgatgctataagc 32920561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 47885132 - 47885183
Alignment:
Q  57 attcataaacacttatatgataagcccttatgctataagctgtgaattaaac 108  Q
    |||||||| || ||||||||||||| ||||||||||||||||  ||||||||    
T  47885132 attcataagcaattatatgataagcgcttatgctataagctgcaaattaaac 47885183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 24263266 - 24263322
Alignment:
Q  60 cataaacacttatatgataagcccttatgctataagctgtgaattaaactgtttatc 116  Q
    |||||||||||||||| ||| |  |||||||||||||  | ||||||||||||||||    
T  24263266 cataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatc 24263322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 36587918 - 36587873
Alignment:
Q  76 ataagcccttatgctataagctgtgaattaaactgtttatcaaaac 121  Q
    |||||| ||||||||||||||||| ||||||| |||||||| ||||    
T  36587918 ataagcgcttatgctataagctgtaaattaaattgtttatcgaaac 36587873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University