View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4750_low_11 (Length: 237)
Name: NF4750_low_11
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4750_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 30790998 - 30790909
Alignment:
| Q |
132 |
atatgcagttgtcttttcatccaaaaagtgcttgttcaatatatagaatacttgataacaaaacaaagattacattcaaaagagcaataac |
222 |
Q |
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| T |
30790998 |
atatgcagttgtcttttcatccaaaa-gtgcttgttcaatatatagaatacttgataacaaaacaaagattacattcaaaagagcaataac |
30790909 |
T |
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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 30791126 - 30791053
Alignment:
| Q |
19 |
ttgatatttattatgatgtcttaaaaaagtgacggttctatatattgacataatcgaaacgcatgcatttggtt |
92 |
Q |
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| T |
30791126 |
ttgatatttattatgatgtcttaaaaaagtgacggttctatatattgatataatcgaaacgcatgcatttggtt |
30791053 |
T |
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