View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4750_low_12 (Length: 232)

Name: NF4750_low_12
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4750_low_12
NF4750_low_12
[»] chr2 (28 HSPs)
chr2 (1-214)||(16564289-16564502)
chr2 (84-206)||(10459260-10459384)
chr2 (86-206)||(24037576-24037698)
chr2 (87-196)||(31469068-31469179)
chr2 (88-196)||(38935365-38935475)
chr2 (140-206)||(944823-944889)
chr2 (140-194)||(41099030-41099084)
chr2 (132-192)||(43398844-43398904)
chr2 (90-181)||(7932743-7932836)
chr2 (83-194)||(41374533-41374646)
chr2 (96-196)||(16180437-16180539)
chr2 (135-206)||(43042213-43042284)
chr2 (140-206)||(4445856-4445922)
chr2 (88-182)||(2884254-2884350)
chr2 (140-183)||(1862670-1862713)
chr2 (144-206)||(14781966-14782028)
chr2 (84-158)||(17437166-17437242)
chr2 (132-193)||(35311190-35311250)
chr2 (134-178)||(19924350-19924394)
chr2 (140-196)||(25089917-25089973)
chr2 (132-176)||(40823551-40823595)
chr2 (144-206)||(10459258-10459320)
chr2 (140-193)||(11386361-11386414)
chr2 (88-181)||(41912094-41912190)
chr2 (158-207)||(42266029-42266078)
chr2 (83-111)||(22162236-22162264)
chr2 (152-192)||(24037648-24037688)
chr2 (106-203)||(35693934-35694033)
[»] chr5 (21 HSPs)
chr5 (87-206)||(39030560-39030681)
chr5 (88-206)||(33669919-33670039)
chr5 (84-206)||(34252711-34252835)
chr5 (88-193)||(5727714-5727820)
chr5 (84-206)||(9956490-9956614)
chr5 (86-170)||(33498357-33498443)
chr5 (91-193)||(12619626-12619724)
chr5 (132-197)||(20185314-20185379)
chr5 (132-192)||(9530957-9531017)
chr5 (139-206)||(34252709-34252776)
chr5 (95-173)||(504129-504207)
chr5 (140-193)||(968287-968340)
chr5 (140-193)||(30293428-30293481)
chr5 (132-192)||(2424444-2424504)
chr5 (96-173)||(42324905-42324984)
chr5 (134-193)||(17555949-17556008)
chr5 (132-206)||(37040147-37040220)
chr5 (86-173)||(38958057-38958146)
chr5 (136-193)||(17234538-17234594)
chr5 (149-206)||(33669988-33670045)
chr5 (96-169)||(19644427-19644502)
[»] chr1 (16 HSPs)
chr1 (87-206)||(19758262-19758384)
chr1 (87-206)||(3739806-3739927)
chr1 (132-196)||(37918916-37918980)
chr1 (84-206)||(47543593-47543717)
chr1 (85-206)||(30693330-30693453)
chr1 (85-178)||(5056314-5056409)
chr1 (96-194)||(3693991-3694091)
chr1 (132-194)||(26265783-26265845)
chr1 (132-196)||(5693576-5693640)
chr1 (140-196)||(31784787-31784843)
chr1 (84-192)||(3739808-3739918)
chr1 (104-196)||(6061462-6061556)
chr1 (148-191)||(50381198-50381241)
chr1 (155-192)||(42711885-42711922)
chr1 (132-196)||(27527707-27527771)
chr1 (132-192)||(29855102-29855162)
[»] chr6 (14 HSPs)
chr6 (132-206)||(30531222-30531296)
chr6 (96-196)||(31323820-31323922)
chr6 (88-192)||(35003757-35003863)
chr6 (89-192)||(1986203-1986308)
chr6 (97-174)||(9829898-9829977)
chr6 (144-195)||(30531181-30531232)
chr6 (140-206)||(9675754-9675820)
chr6 (140-194)||(14222845-14222899)
chr6 (132-192)||(1937689-1937749)
chr6 (133-181)||(24547189-24547237)
chr6 (132-193)||(13320854-13320915)
chr6 (140-193)||(33822340-33822393)
chr6 (140-196)||(2282450-2282506)
chr6 (84-193)||(31522613-31522723)
[»] chr8 (8 HSPs)
chr8 (88-194)||(35901039-35901147)
chr8 (95-196)||(9548052-9548154)
chr8 (133-194)||(29797944-29798005)
chr8 (136-196)||(11114284-11114344)
chr8 (151-196)||(32729727-32729772)
chr8 (140-192)||(37627916-37627968)
chr8 (132-173)||(13210008-13210049)
chr8 (140-192)||(33557781-33557833)
[»] chr7 (15 HSPs)
chr7 (91-206)||(6803308-6803425)
chr7 (88-196)||(18731992-18732101)
chr7 (136-194)||(3769757-3769815)
chr7 (100-206)||(16866393-16866501)
chr7 (94-192)||(23971191-23971290)
chr7 (132-193)||(32652411-32652472)
chr7 (132-193)||(44816511-44816572)
chr7 (88-181)||(47967911-47968006)
chr7 (87-193)||(3719874-3719982)
chr7 (136-192)||(27147603-27147659)
chr7 (134-193)||(14773517-14773576)
chr7 (134-193)||(15223969-15224028)
chr7 (84-117)||(1554918-1554951)
chr7 (98-180)||(4259324-4259408)
chr7 (140-168)||(5026192-5026220)
[»] chr4 (12 HSPs)
chr4 (84-193)||(54235227-54235338)
chr4 (86-206)||(12276816-12276938)
chr4 (88-196)||(30848592-30848704)
chr4 (140-196)||(4423201-4423257)
chr4 (132-192)||(5496857-5496917)
chr4 (141-196)||(51714236-51714291)
chr4 (149-206)||(2734171-2734228)
chr4 (96-192)||(24980631-24980729)
chr4 (140-197)||(2871550-2871607)
chr4 (136-193)||(13777136-13777193)
chr4 (141-194)||(37783907-37783960)
chr4 (84-112)||(38940748-38940776)
[»] scaffold0067 (1 HSPs)
scaffold0067 (88-196)||(35938-36048)
[»] chr3 (15 HSPs)
chr3 (96-196)||(32221472-32221574)
chr3 (96-196)||(26914452-26914553)
chr3 (94-202)||(31280159-31280269)
chr3 (132-194)||(47783122-47783184)
chr3 (140-192)||(26104270-26104322)
chr3 (134-200)||(37330973-37331039)
chr3 (140-193)||(11256577-11256630)
chr3 (144-193)||(32221526-32221575)
chr3 (132-196)||(15282641-15282705)
chr3 (132-192)||(29637439-29637499)
chr3 (140-192)||(46733069-46733121)
chr3 (88-123)||(46829047-46829082)
chr3 (84-123)||(46829119-46829158)
chr3 (140-194)||(18364220-18364273)
chr3 (104-194)||(5307341-5307433)
[»] scaffold0097 (1 HSPs)
scaffold0097 (132-192)||(37955-38015)
[»] scaffold0034 (1 HSPs)
scaffold0034 (140-192)||(94998-95050)
[»] scaffold0027 (2 HSPs)
scaffold0027 (132-192)||(13218-13278)
scaffold0027 (149-194)||(13178-13223)
[»] scaffold0072 (1 HSPs)
scaffold0072 (95-192)||(20368-20467)
[»] scaffold0009 (1 HSPs)
scaffold0009 (140-194)||(51225-51279)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 16564289 - 16564502
Alignment:
Q  1 ataagctttgaattaacatgggaaaaagccaaagggaatgaagctattgttcaccttcactaaattttttgctaatgtctatttccctccgtcctaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  16564289 ataagctttgaattaacatgggaaaaagccaaagggaatgaagctattgttcaccttcactaaactttttgctaatgtctatttccttccgtcctaaaat 16564388  T
Q  101 ataagcaaaaattggtctacaaacattagtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggaggga 200  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  16564389 ataagcaaaaattggtctacaaacgttagtgtttggttcaaaatttgtaccaaatacatcaacttatgttgactcatttttacttacattttgggacgga 16564488  T
Q  201 aggagtgtattgca 214  Q
    ||||||||||||||    
T  16564489 aggagtgtattgca 16564502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 10459260 - 10459384
Alignment:
Q  84 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 181  Q
    ||||||| ||| |||||||||||||||||||||| |||||  ||| |||  |||||| |||||||||| || || |||||||||||||||||  || |||    
T  10459260 tccctccttcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatcttt 10459359  T
Q  182 gcttacattttgggagggaaggagt 206  Q
    ||||||||||||||| ||| |||||    
T  10459360 gcttacattttgggacggagggagt 10459384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 24037698 - 24037576
Alignment:
Q  86 cctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgc 183  Q
    ||||||||||||||  ||||||||||| |||| ||| |  ||  |||  || ||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  24037698 cctccgtcctaaaaagtaagcaaaaatgggtcgacataagttgatgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgc 24037599  T
Q  184 ttacattttgggagggaaggagt 206  Q
    ||||||||| ||| ||| |||||    
T  24037598 ttacattttaggacggatggagt 24037576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 31469068 - 31469179
Alignment:
Q  87 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgct 184  Q
    |||||||| |||||||||||||||||||||| |||||  ||| |||  |||||| |||||||||| ||||||||| |||||  ||||||  |||||||||    
T  31469068 ctccgtcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgct 31469167  T
Q  185 tacattttggga 196  Q
    || |||||||||    
T  31469168 tatattttggga 31469179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 38935475 - 38935365
Alignment:
Q  88 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 185  Q
    ||||||| ||||||||| ||||||||  || |||||  ||| |||  || ||| ||||| |||| |||||||||||||||||||||||||||||||||||    
T  38935475 tccgtccaaaaatataaacaaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgctt 38935376  T
Q  186 acattttggga 196  Q
    | |||||||||    
T  38935375 atattttggga 38935365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 944823 - 944889
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 206  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||| |||||    
T  944823 aaaatttgtaccaaatacatcaacttatgttgactaatttttacttacattttgagacggagggagt 944889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 41099030 - 41099084
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 194  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  41099030 aaaatttgtaccaaatacattaacttatgttgacccatttttgcttacattttgg 41099084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 43398904 - 43398844
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  43398904 tttggttcaaaatttgtaccaaatacatcaacttatattgacccatttttacttacatttt 43398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 7932743 - 7932836
Alignment:
Q  90 cgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 181  Q
    |||| ||||||||||||||||||| ||| |||||  |||  || ||||||| ||||||| || || ||||||||||||||||||||||||||||    
T  7932743 cgtcttaaaatataagcaaaaattagtcaacaaaagttaacgtatttggttcaaaatttatatcagatacatcaacttatgttgactcattttt 7932836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 41374646 - 41374533
Alignment:
Q  83 ttccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttt 180  Q
    |||||||||||  |||||||||| ||||||| ||| || ||  ||| |||  ||| || ||| ||| |||||||||||||||||| |||| |||||||||    
T  41374646 ttccctccgtctcaaaatataagtaaaaattagtcaacgaaagttaatgtatttgattcaaagtttataccaaatacatcaacttgtgttcactcatttt 41374547  T
Q  181 tgcttacattttgg 194  Q
    ||||||||||||||    
T  41374546 tgcttacattttgg 41374533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 16180539 - 16180437
Alignment:
Q  96 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    |||||||||| |||| |||||| |||||  ||| |||  |||||| ||||||| ||   |||||||||| ||||||||||| ||||||||||||||||||    
T  16180539 aaaatataagtaaaatttggtcaacaaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgcttacattttg 16180440  T
Q  194 gga 196  Q
    |||    
T  16180439 gga 16180437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 43042213 - 43042284
Alignment:
Q  135 ggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 206  Q
    |||| ||||||| || || |||||||||||| |||| ||||||||||||||||||||||||| ||| |||||    
T  43042213 ggttcaaaatttatatcagatacatcaacttttgtttactcatttttgcttacattttgggatggagggagt 43042284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 4445922 - 4445856
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 206  Q
    ||||||||||||||||||||||| |||| || ||| ||||||||||| ||||||||| |||| ||||    
T  4445922 aaaatttgtaccaaatacatcaatttatattaacttatttttgcttatattttgggatggaaagagt 4445856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 2884254 - 2884350
Alignment:
Q  88 tccgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttg 182  Q
    |||||||||||||||||| ||||||| ||| ||||| ||||  || ||||||| ||||||| || |||||| || || |||| ||||||||||||||    
T  2884254 tccgtcctaaaatataagtaaaaatttgtcaacaaaaattaatgtatttggttcaaaatttatatcaaatatattaaattatattgactcatttttg 2884350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 1862713 - 1862670
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgc 183  Q
    |||||||||  |||||||||||||||||||||||||||||||||    
T  1862713 aaaatttgtgtcaaatacatcaacttatgttgactcatttttgc 1862670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 14781966 - 14782028
Alignment:
Q  144 tttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 206  Q
    |||| ||||||||||  |||||||||||||||| |||||||||| |||||||| ||| |||||    
T  14781966 tttgaaccaaatacactaacttatgttgactcaattttgcttacgttttgggacggatggagt 14782028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 17437242 - 17437166
Alignment:
Q  84 tccctccgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaataca 158  Q
    ||||||||||| ||||||||| |||||||| ||| ||||| ||||  || ||| ||| |||||||||||||||||||    
T  17437242 tccctccgtcccaaaatataaacaaaaatttgtcaacaaaaattaatgtatttagttcaaaatttgtaccaaataca 17437166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 35311250 - 35311190
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    ||||||| ||||||||||| | ||| || ||||||||||||| |||||||||||||||||||    
T  35311250 tttggttcaaaatttgtacaagatatat-aacttatgttgacccatttttgcttacattttg 35311190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 19924350 - 19924394
Alignment:
Q  134 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatt 178  Q
    ||||| ||||||||||||||||||||||||||| |||||| ||||    
T  19924350 tggttcaaaatttgtaccaaatacatcaacttacgttgacccatt 19924394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 25089973 - 25089917
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 196  Q
    |||||||||| |||||||| ||||||||||| |  ||||||| ||||||||||||||    
T  25089973 aaaatttgtatcaaatacaacaacttatgttaatccattttttcttacattttggga 25089917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 40823595 - 40823551
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactca 176  Q
    ||||||||||||||| || |||||||||||| |||||||||||||    
T  40823595 tttggtttaaaatttatatcaaatacatcaaattatgttgactca 40823551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 10459320 - 10459258
Alignment:
Q  144 tttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 206  Q
    |||| ||||||||||| ||||| |||||||  ||||||||||| ||||||||| ||| |||||    
T  10459320 tttgaaccaaatacattaacttttgttgaccaatttttgcttatattttgggaaggagggagt 10459258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 11386361 - 11386414
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    |||||||||| ||||||||||||||||||||||   | ||||||||| ||||||    
T  11386361 aaaatttgtatcaaatacatcaacttatgttgatcaaattttgcttatattttg 11386414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 41912190 - 41912094
Alignment:
Q  88 tccgtcctaaaatataagcaaaaa-ttggtctacaaacattagtgttt--ggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 181  Q
    ||||| |||||||||||||||||| ||| || ||||| |||| ||| |  |||| |||||||||||||  || || |||||||||||||| ||||||    
T  41912190 tccgttctaaaatataagcaaaaaattgttcaacaaaaattaatgtatctggttcaaaatttgtaccagctagattaacttatgttgacttattttt 41912094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 42266029 - 42266078
Alignment:
Q  158 atcaacttatgttgactcatttttgcttacattttgggagggaaggagtg 207  Q
    ||||| ||||| |||  |||||||||||||||||||||| ||||||||||    
T  42266029 atcaatttatggtgatccatttttgcttacattttgggatggaaggagtg 42266078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 111
Target Start/End: Original strand, 22162236 - 22162264
Alignment:
Q  83 ttccctccgtcctaaaatataagcaaaaa 111  Q
    |||||||||||||||||||||||||||||    
T  22162236 ttccctccgtcctaaaatataagcaaaaa 22162264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 24037648 - 24037688
Alignment:
Q  152 aaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    |||||||||||||||||| ||| ||||||||||||| ||||    
T  24037648 aaatacatcaacttatgtcgacccatttttgcttacttttt 24037688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 35693934 - 35694033
Alignment:
Q  106 caaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaagg 203  Q
    |||||||||||| | ||| |||| |||  ||||||||||||| ||| ||||||||| ||  |||| ||| ||||||| ||||| |||||| || ||||||    
T  35693934 caaaaattggtcaataaaaattaatgtatttggtttaaaattagtatcaaatacattaatctatgatgattcattttcgcttatattttgagacggaagg 35694033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 39030560 - 39030681
Alignment:
Q  87 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgct 184  Q
    |||||| |||||||||||||||||||||||| |||||  ||| |||  |||||| |||||||||||||||||||| ||||| |||||||| |||||||||    
T  39030560 ctccgttctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgct 39030659  T
Q  185 tacattttgggagggaaggagt 206  Q
    || ||||||||| ||| |||||    
T  39030660 tatattttgggatggagggagt 39030681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 206
Target Start/End: Complemental strand, 33670039 - 33669919
Alignment:
Q  88 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 185  Q
    ||||||| ||||| |||||||||||||||| | |||  ||| |||  |||||||||||||||||||| |||||  ||||||||||||| |||||||||||    
T  33670039 tccgtcccaaaatgtaagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgctt 33669940  T
Q  186 acattttgggagggaaggagt 206  Q
    ||||||||||| ||| |||||    
T  33669939 acattttgggatggatggagt 33669919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 34252711 - 34252835
Alignment:
Q  84 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 181  Q
    ||||||||||| ||||| |||||||||||||||| |||||  ||| |||  |||||| ||||||| | ||| || |||||||||||||| || |||||||    
T  34252711 tccctccgtcccaaaatgtaagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttatgccacattcatcaacttatgttaacccattttt 34252810  T
Q  182 gcttacattttgggagggaaggagt 206  Q
    ||||||||||||||| ||| |||||    
T  34252811 gcttacattttgggacggagggagt 34252835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 5727714 - 5727820
Alignment:
Q  88 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt-ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctta 186  Q
    ||||||| ||||| |||| ||||||||||| | ||| |||| | | |||||||||||||||||||| ||||||||||||||  ||||  |||||| ||||    
T  5727714 tccgtcccaaaatgtaagtaaaaattggtcaataaaaattaatatattggtttaaaatttgtaccagatacatcaacttattgtgacctatttttactta 5727813  T
Q  187 cattttg 193  Q
    |||||||    
T  5727814 cattttg 5727820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 206
Target Start/End: Complemental strand, 9956614 - 9956490
Alignment:
Q  84 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 181  Q
    ||||||||||| ||||| |||| ||||||||||  |||||  ||| |||  ||| || ||||||| || || |||||||||| ||||||||| |||||||    
T  9956614 tccctccgtcccaaaatgtaagtaaaaattggttaacaaaagttaatgtatttgattcaaaatttataacagatacatcaacatatgttgacccattttt 9956515  T
Q  182 gcttacattttgggagggaaggagt 206  Q
     |||||||||||||| ||| |||||    
T  9956514 acttacattttgggatggatggagt 9956490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 33498357 - 33498443
Alignment:
Q  86 cctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgtt 170  Q
    ||||||||||||||||||||||||| |||| | ||||| || | | |  |||||| ||||||||||| |||||||||||||||||||    
T  33498357 cctccgtcctaaaatataagcaaaagttggccaacaaaaatcaatatatttggttcaaaatttgtacaaaatacatcaacttatgtt 33498443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 12619626 - 12619724
Alignment:
Q  91 gtcctaaaatataagcaaaaattggtctacaaacattagtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatt 190  Q
    |||||||||||||||||||| ||| || ||||| ||     |||| || ||||||| || ||||||||||||||||||||||  |||||||||||| |||    
T  12619626 gtcctaaaatataagcaaaagttgatcaacaaatata----tttgattcaaaatttatatcaaatacatcaacttatgttgatccatttttgcttatatt 12619721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 20185379 - 20185314
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggag 197  Q
    ||||||| ||||||||||| ||||||||| |||||| || ||||||||||  ||||||||||||||    
T  20185379 tttggttcaaaatttgtacaaaatacatcgacttatattaactcatttttatttacattttgggag 20185314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 9530957 - 9531017
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    ||||||| ||||||| || |||||||| ||| |||| ||||||||||||||||||||||||    
T  9530957 tttggttcaaaatttatatcaaatacaccaatttatattgactcatttttgcttacatttt 9531017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 34252776 - 34252709
Alignment:
Q  139 taaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 206  Q
    |||| |||| ||||||||||| ||||| |||||||  ||||||||||||||||||||| ||| |||||    
T  34252776 taaattttgaaccaaatacattaacttttgttgaccaatttttgcttacattttgggacggagggagt 34252709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 504129 - 504207
Alignment:
Q  95 taaaatataagcaaaaattggtctacaaacattagtgtttggtttaaaatttgtaccaaatacatcaacttatgttgac 173  Q
    |||||||||||||||||| |||| ||||| |||| | ||||||| | |||||||| ||||||||| || || |||||||    
T  504129 taaaatataagcaaaaatcggtcaacaaaaattaatatttggttcagaatttgtatcaaatacattaatttttgttgac 504207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 968340 - 968287
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    |||||||||||||||||||||||||||  ||||| || |||| |||||||||||    
T  968340 aaaatttgtaccaaatacatcaacttaaattgacccacttttacttacattttg 968287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 30293428 - 30293481
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    ||||||| || ||||||||||||| ||||||||||||||||| |||| ||||||    
T  30293428 aaaatttatatcaaatacatcaacatatgttgactcatttttacttatattttg 30293481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 2424504 - 2424444
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    ||||||| ||||||||||||| |||||||| |||||||| ||  ||||||||||| |||||    
T  2424504 tttggttcaaaatttgtaccatatacatcagcttatgttaacaaatttttgcttatatttt 2424444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 42324984 - 42324905
Alignment:
Q  96 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgac 173  Q
    |||||||||| ||||||||||| |||||  ||| |||  ||| |||||||||| ||||||||||||||| |||| |||||    
T  42324984 aaaatataagtaaaaattggtcaacaaaagttaatgtatttgttttaaaatttataccaaatacatcaatttatattgac 42324905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 17556008 - 17555949
Alignment:
Q  134 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    ||||| ||||||| || |||||| ||||||||| |||||||||||||| |||| ||||||    
T  17556008 tggttcaaaatttatatcaaatatatcaacttacgttgactcatttttacttatattttg 17555949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 37040147 - 37040220
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 206  Q
    |||| |||||||||||||||  ||||||||||||||||| || ||||||| |||| ||||| ||| ||| |||||    
T  37040147 tttgatttaaaatttgtacctcatacatcaacttatgtt-acccatttttacttatattttaggatggagggagt 37040220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 173
Target Start/End: Original strand, 38958057 - 38958146
Alignment:
Q  86 cctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgac 173  Q
    ||||||| | |||||||||| |||||||| |  |||||  ||| |||  |||||| ||| ||||||||||||||||||||| ||||||||    
T  38958057 cctccgttccaaaatataagtaaaaattgattaacaaaagttaatgtatttggttcaaattttgtaccaaatacatcaactcatgttgac 38958146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 17234594 - 17234538
Alignment:
Q  136 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    |||||||||||||| ||||||||| || |||| || ||||||||||||||| ||||||    
T  17234594 gtttaaaatttgtagcaaatacattaatttatatt-actcatttttgcttatattttg 17234538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 33669988 - 33670045
Alignment:
Q  149 accaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 206  Q
    ||||||||||| ||||| | |||||  ||||||||||||||||||||| ||| |||||    
T  33669988 accaaatacattaactttttttgaccaatttttgcttacattttgggacggatggagt 33670045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 19644502 - 19644427
Alignment:
Q  96 aaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgt 169  Q
    |||||||||| || ||||| || ||||| ||||  || ||||||| ||||||| ||| ||||||||||||||||||    
T  19644502 aaaatataagtaagaattgatcaacaaaaattaacgtatttggttcaaaatttatactaaatacatcaacttatgt 19644427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 19758384 - 19758262
Alignment:
Q  87 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttg-actcatttttgc 183  Q
    ||||||| ||||||||||| ||||||||||| |||||  ||| |||  || ||||| ||||||||||||||||||||||||| |||  ||||||||||||    
T  19758384 ctccgtcataaaatataagtaaaaattggtcaacaaaagttaatgtatttagtttataatttgtaccaaatacatcaacttacgttatactcatttttgc 19758285  T
Q  184 ttacattttgggagggaaggagt 206  Q
    ||||||||||||| |||||||||    
T  19758284 ttacattttgggacggaaggagt 19758262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 3739927 - 3739806
Alignment:
Q  87 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgct 184  Q
    ||||||||||||||||||||||||||||||| |||||  ||| |||  |||||| |||||||||||||||||||| |||||  ||||||  |||||||||    
T  3739927 ctccgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgct 3739828  T
Q  185 tacattttgggagggaaggagt 206  Q
    || ||||||||| ||| |||||    
T  3739827 tatattttgggacggagggagt 3739806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 37918980 - 37918916
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 196  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||    
T  37918980 tttggtttaaaatttatatcaaatacatcaacttatgttgattcatttttgcttacattttggga 37918916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 47543593 - 47543717
Alignment:
Q  84 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtg--tttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 181  Q
    |||||| ||| ||||||||||  ||||||||||| ||||| |||| ||  ||||||| ||||||||||||||||||||||||||| | |   |||||||     
T  47543593 tccctctgtcttaaaatataataaaaaattggtcaacaaaaattaatgaatttggttcaaaatttgtaccaaatacatcaacttacgctatttcattttg 47543692  T
Q  182 gcttacattttgggagggaaggagt 206  Q
    ||||||||||||||| ||| |||||    
T  47543693 gcttacattttgggacggagggagt 47543717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 30693330 - 30693453
Alignment:
Q  85 ccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttg 182  Q
    |||||||||| |||||||||  |||||||| || ||||| |||| |||  ||| || ||||||||||||||||||||||  ||||||||| ||||||||     
T  30693330 ccctccgtccgaaaatataaataaaaattgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacatcatattatgttgattcattttta 30693429  T
Q  183 cttacattttgggagggaaggagt 206  Q
    |||||||||||  | |||||||||    
T  30693430 cttacattttgaaacggaaggagt 30693453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 5056409 - 5056314
Alignment:
Q  85 ccctccgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatt 178  Q
    ||||| |||| ||||||||| |||||||||||| | ||| ||||  || |||| || |||||||||| ||||||||||||||||||||||||||||    
T  5056409 ccctctgtcccaaaatataaacaaaaattggtcaataaaaattaacgtatttgattcaaaatttgtatcaaatacatcaacttatgttgactcatt 5056314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 3694091 - 3693991
Alignment:
Q  96 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    |||||||||| | ||||||||| ||||| |||| |||  ||| || ||||||||||  ||||||||||| |||||||||||||||| | |||||||||||    
T  3694091 aaaatataagtagaaattggtcaacaaaaattaatgtatttgattcaaaatttgtattaaatacatcaatttatgttgactcatttctacttacattttg 3693992  T
Q  194 g 194  Q
    |    
T  3693991 g 3693991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 26265845 - 26265783
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 194  Q
    ||||||| ||||||| ||| ||||||||||||||||||| ||  |||||||||||||||||||    
T  26265845 tttggttcaaaatttatactaaatacatcaacttatgttaacatatttttgcttacattttgg 26265783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 5693640 - 5693576
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 196  Q
    ||||||||||||||||||| ||| ||||||| |||||||||   |||||||||||||||| ||||    
T  5693640 tttggtttaaaatttgtactaaaaacatcaatttatgttgatatatttttgcttacatttcggga 5693576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 31784787 - 31784843
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 196  Q
    ||||||||||  | ||||||||||||||||||||  |||||||||||||||||||||    
T  31784787 aaaatttgtattagatacatcaacttatgttgacaaatttttgcttacattttggga 31784843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 3739808 - 3739918
Alignment:
Q  84 tccctccgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 181  Q
    ||||||||||| |||||||||||||||||||||| || ||  |||  || ||||||  ||| |||  ||||||||||| ||||| |||||||  ||||||    
T  3739808 tccctccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaattttt 3739907  T
Q  182 gcttacatttt 192  Q
    ||||| |||||    
T  3739908 gcttatatttt 3739918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 6061556 - 6061462
Alignment:
Q  104 agcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 196  Q
    |||||| ||||||| ||||| |||| |||  ||| |||||||||||||| | |||||| |||||||||||  ||||| ||||| |||||||||||    
T  6061556 agcaaatattggtcaacaaaaattaatgtatttgttttaaaatttgtactagatacattaacttatgttggttcattcttgctaacattttggga 6061462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 50381198 - 50381241
Alignment:
Q  148 taccaaatacatcaacttatgttgactcatttttgcttacattt 191  Q
    ||||||||||||||||||||||||| | |||||| |||||||||    
T  50381198 taccaaatacatcaacttatgttgatttatttttccttacattt 50381241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 42711885 - 42711922
Alignment:
Q  155 tacatcaacttatgttgactcatttttgcttacatttt 192  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  42711885 tacatcaacttatgatgacttatttttgcttacatttt 42711922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 27527771 - 27527707
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 196  Q
    ||||||| ||||||| ||||| |||||||||||||| || || |||||||  ||| |||||||||    
T  27527771 tttggttcaaaatttataccagatacatcaacttatatttacccatttttatttatattttggga 27527707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 29855102 - 29855162
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    ||||||| ||||||||||| |||||||| ||||| ||||||   ||||||||||| |||||    
T  29855102 tttggttaaaaatttgtacgaaatacattaacttttgttgatcaatttttgcttatatttt 29855162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 30531222 - 30531296
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 206  Q
    ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||    
T  30531222 tttggttcaaagtttgtaccaaatacatcaacttatgttgagtcatttttgcttacattttgggacggagggagt 30531296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 31323820 - 31323922
Alignment:
Q  96 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    ||||| |||||||||||||||| |||||  ||| |||  || ||| ||||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  31323820 aaaatgtaagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacattttg 31323919  T
Q  194 gga 196  Q
    |||    
T  31323920 gga 31323922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 35003757 - 35003863
Alignment:
Q  88 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 185  Q
    |||||||||||||||||| ||||||||||  | ||| |||| |||  ||| || ||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  35003757 tccgtcctaaaatataagtaaaaattggttaataaaaattaatgtatttgattcaaaatttgtacaaaatatatcaacttatgttgattcatttttgctt 35003856  T
Q  186 acatttt 192  Q
    |||||||    
T  35003857 acatttt 35003863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 1986203 - 1986308
Alignment:
Q  89 ccgtcctaaaatataagcaaaaattggtctacaaacattagtg--tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctta 186  Q
    ||||||||||||||||| |||| |||||| | ||| |||| ||  ||| ||||||||||| ||||||||| || |||||||||||||| ||||||  |||    
T  1986203 ccgtcctaaaatataagtaaaagttggtcaataaaaattaatgcatttagtttaaaatttataccaaatatattaacttatgttgactgatttttattta 1986302  T
Q  187 catttt 192  Q
    ||||||    
T  1986303 catttt 1986308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 9829898 - 9829977
Alignment:
Q  97 aaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgact 174  Q
    ||||||||| ||||||| ||| ||||| |||| |||  || ||||||||||||||||||||||||||| |||||||||||    
T  9829898 aaatataagtaaaaattagtcaacaaaaattaatgtattttgtttaaaatttgtaccaaatacatcaatttatgttgact 9829977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 30531232 - 30531181
Alignment:
Q  144 tttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggg 195  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||||||    
T  30531232 tttgaaccaaatacatcaacttatgttgacccgtttttgcttacattttggg 30531181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 9675820 - 9675754
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 206  Q
    ||||||||||||| || |||||||||||||||||  |||||||||||||||||| || ||| |||||    
T  9675820 aaaatttgtaccagatgcatcaacttatgttgaccaatttttgcttacattttgagacggagggagt 9675754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 14222845 - 14222899
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 194  Q
    |||||||  |||| |||||||||||||||||||| ||||||||||||||||||||    
T  14222845 aaaatttacaccatatacatcaacttatgttgacccatttttgcttacattttgg 14222899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 1937689 - 1937749
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    |||| |||||||||| ||| |||| ||||||||||| || | |||||||||||||||||||    
T  1937689 tttgatttaaaatttatactaaattcatcaacttatattaattcatttttgcttacatttt 1937749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 24547237 - 24547189
Alignment:
Q  133 ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 181  Q
    |||||||||||||| || |||||||||||| ||||||||||| ||||||    
T  24547237 ttggtttaaaatttatatcaaatacatcaatttatgttgacttattttt 24547189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 13320854 - 13320915
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    |||||| ||||||||  |||| ||||||||||||  ||||||||||| ||||||| ||||||    
T  13320854 tttggtgtaaaatttagaccagatacatcaactttcgttgactcattgttgcttatattttg 13320915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 33822340 - 33822393
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    |||||||||| ||||||||||||||||| || |  ||||||| |||||||||||    
T  33822340 aaaatttgtatcaaatacatcaacttatattaatccatttttacttacattttg 33822393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 2282450 - 2282506
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 196  Q
    |||| ||||| |||||||||||| ||||||| ||| ||||||||||| || ||||||    
T  2282450 aaaaattgtatcaaatacatcaatttatgttaactaatttttgcttatatattggga 2282506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 31522723 - 31522613
Alignment:
Q  84 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtg--tttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 181  Q
    ||||| ||||| ||||| ||||||||| |||||| |||||  ||| ||  |||| || ||||||||||||| |||||||   |||| || ||| ||||||    
T  31522723 tcccttcgtcccaaaatgtaagcaaaa-ttggtcaacaaaagttaatgcatttgattcaaaatttgtaccagatacatcgttttatattaacttattttt 31522625  T
Q  182 gcttacattttg 193  Q
    ||||||||||||    
T  31522624 gcttacattttg 31522613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 35901147 - 35901039
Alignment:
Q  88 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgttt--ggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 185  Q
    ||||||||||||||||||||||||| |||| |||||  ||| ||| |  || | ||||||||||| || |||||||||||||||||||||||||||||||    
T  35901147 tccgtcctaaaatataagcaaaaataggtcaacaaaagttaatgtattgggctcaaaatttgtactaattacatcaacttatgttgactcatttttgctt 35901048  T
Q  186 acattttgg 194  Q
    | |||||||    
T  35901047 atattttgg 35901039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 196
Target Start/End: Complemental strand, 9548154 - 9548052
Alignment:
Q  95 taaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    |||||||||| ||||||||| || ||||| |||| | |  |||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||    
T  9548154 taaaatataaacaaaaattgttcaacaaaaattattatatttggttcaaaatttgtactaaatacatcaacttatgttgactcattttt-cttgcatttt 9548056  T
Q  193 ggga 196  Q
    ||||    
T  9548055 ggga 9548052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 29798005 - 29797944
Alignment:
Q  133 ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 194  Q
    |||||| |||||||||||||||||||| || ||||||| |||||||||||||||||||||||    
T  29798005 ttggttcaaaatttgtaccaaatacataaatttatgttaactcatttttgcttacattttgg 29797944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 11114284 - 11114344
Alignment:
Q  136 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 196  Q
    ||||||||||| |||||||||||||||||||||||||   |||||| |||| |||||||||    
T  11114284 gtttaaaatttataccaaatacatcaacttatgttgatcaatttttacttatattttggga 11114344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 32729772 - 32729727
Alignment:
Q  151 caaatacatcaacttatgttgactcatttttgcttacattttggga 196  Q
    |||||||||||| || |||||| |||||||||||||||||||||||    
T  32729772 caaatacatcaatttttgttgattcatttttgcttacattttggga 32729727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 37627968 - 37627916
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    |||||||||| ||||||||||||||||| || ||| |||||| ||||||||||    
T  37627968 aaaatttgtatcaaatacatcaacttatattaacttatttttacttacatttt 37627916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 13210008 - 13210049
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgac 173  Q
    ||||||| |||||||||| || ||||||||||||||||||||    
T  13210008 tttggttcaaaatttgtatcagatacatcaacttatgttgac 13210049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 33557833 - 33557781
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactca-tttttgcttacatttt 192  Q
    |||||||||| ||||||||| |||||||||||| ||| ||||||||||||||||    
T  33557833 aaaatttgtatcaaatacataaacttatgttga-tcattttttgcttacatttt 33557781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 6803308 - 6803425
Alignment:
Q  91 gtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttaca 188  Q
    |||| ||||||||||||||| |||||| |||||  ||| |||  || ||||||||||||||||||||||  |||||| ||||||||| ||||||||| ||    
T  6803308 gtcccaaaatataagcaaaatttggtcaacaaaagttaatgtatttagtttaaaatttgtaccaaatacgccaacttgtgttgactcgtttttgcttgca 6803407  T
Q  189 ttttgggagggaaggagt 206  Q
    |||| ||| |||||||||    
T  6803408 ttttaggacggaaggagt 6803425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 18732101 - 18731992
Alignment:
Q  88 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 185  Q
    ||||||||||||| |||| ||||||||||| | |||  ||| |||  |||||| ||||||| ||||| ||||||||| |||||||||  |||||||||||    
T  18732101 tccgtcctaaaatgtaag-aaaaattggtcaataaaagttaatgtatttggttcaaaatttataccagatacatcaatttatgttgatccatttttgctt 18732003  T
Q  186 acattttggga 196  Q
    | |||||||||    
T  18732002 atattttggga 18731992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 3769815 - 3769757
Alignment:
Q  136 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 194  Q
    ||||||||||||||  |||||||||||||| ||||||||||||||| ||| ||||||||    
T  3769815 gtttaaaatttgtattaaatacatcaacttgtgttgactcatttttacttgcattttgg 3769757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 16866501 - 16866393
Alignment:
Q  100 tataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggag 197  Q
    |||||||||||||||||| |||||  ||| |||  |||||| |||||||||||| ||||||| ||||| | ||||   ||||||||||| |||||||||     
T  16866501 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatattttgggat 16866402  T
Q  198 ggaaggagt 206  Q
    ||| |||||    
T  16866401 ggagggagt 16866393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 23971290 - 23971191
Alignment:
Q  94 ctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattt 191  Q
    |||||||||||| ||||||||||| ||||| || | | |  || ||| |||||||||||||||||||||||||||| |||| | ||||||||||| ||||    
T  23971290 ctaaaatataag-aaaaattggtcaacaaaaataaatatatttagttcaaaatttgtaccaaatacatcaacttatattgatttatttttgcttatattt 23971192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 32652472 - 32652411
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    ||||||| ||| ||||||||||||||| ||| ||||||||||| |||||| |||||||||||    
T  32652472 tttggttcaaagtttgtaccaaatacaccaatttatgttgacttatttttacttacattttg 32652411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 44816511 - 44816572
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    ||||||| ||||||||||||||||||||||  |||| || | ||||||||||||||||||||    
T  44816511 tttggttcaaaatttgtaccaaatacatcagtttatattaattcatttttgcttacattttg 44816572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 47967911 - 47968006
Alignment:
Q  88 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 181  Q
    ||||||| ||||||||| ||||| | |||| ||||| |||  |||  || ||||||||||||||| |||||||| |||||||||||| ||||||||    
T  47967911 tccgtcccaaaatataaacaaaattcggtcaacaaaaatttatgtatttagtttaaaatttgtactaaatacattaacttatgttgattcattttt 47968006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 3719874 - 3719982
Alignment:
Q  87 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgct 184  Q
    |||| ||| |||||||| | ||||||||||| || ||  |||||||  |||||| ||| ||| ||| | |||||||||||||||||||   |||||||||    
T  3719874 ctccatcccaaaatatatgtaaaaattggtcaactaaagttagtgtatttggttcaaattttttacgagatacatcaacttatgttgatcaatttttgct 3719973  T
Q  185 tacattttg 193  Q
    |||||||||    
T  3719974 tacattttg 3719982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 27147659 - 27147603
Alignment:
Q  136 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    |||||||||||||| ||||||||| ||||| |||||||| |||||| |||| |||||    
T  27147659 gtttaaaatttgtatcaaatacattaacttttgttgactaatttttacttatatttt 27147603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 14773517 - 14773576
Alignment:
Q  134 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    ||||| ||||||| || || ||||||||||||| |||||||||||||| |||| ||||||    
T  14773517 tggttcaaaatttatatcagatacatcaacttacgttgactcatttttacttatattttg 14773576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 15223969 - 15224028
Alignment:
Q  134 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    ||||| ||||||| || || ||||||||||||| |||||||||||||| |||| ||||||    
T  15223969 tggttcaaaatttatatcagatacatcaacttacgttgactcatttttacttatattttg 15224028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 1554951 - 1554918
Alignment:
Q  84 tccctccgtcctaaaatataagcaaaaattggtc 117  Q
    ||||||||||||||||||||| ||||||||||||    
T  1554951 tccctccgtcctaaaatataaacaaaaattggtc 1554918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 4259408 - 4259324
Alignment:
Q  98 aatataagcaaaaattggtcta-caaacattagtgt-ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttt 180  Q
    ||||||||||||||||| |||| ||||  ||| ||| || ||| ||||||| ||  |||||||| ||||||||||||||||||||    
T  4259408 aatataagcaaaaattgatctaacaaaagttaatgtatttgttcaaaatttatagtaaatacattaacttatgttgactcatttt 4259324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 5026192 - 5026220
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatg 168  Q
    |||||||||||||||||||||||||||||    
T  5026192 aaaatttgtaccaaatacatcaacttatg 5026220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 54235338 - 54235227
Alignment:
Q  84 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 181  Q
    ||||||| | || |||||||| ||||||||| || |||||  ||| |||  |||||| ||||||||||| ||||||||||| |||| |||||||||||||    
T  54235338 tccctccattcttaaatataaacaaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcattttt 54235239  T
Q  182 gcttacattttg 193  Q
    ||||||||||||    
T  54235238 gcttacattttg 54235227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 12276816 - 12276938
Alignment:
Q  86 cctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgc 183  Q
    |||||||||||||||||||| ||| |||||||  ||||  ||| |||  ||| || ||||||| ||| ||||||||||||||||||||||  ||||||||    
T  12276816 cctccgtcctaaaatataagtaaagattggtcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgc 12276915  T
Q  184 ttacattttgggagggaaggagt 206  Q
    ||| ||||||| | |||||||||    
T  12276916 ttatattttggaatggaaggagt 12276938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 30848704 - 30848592
Alignment:
Q  88 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtacc--aaatacatcaacttatgttgactcatttttgc 183  Q
    ||||| ||||||| |||||||||||||||| ||||| |||| |||  || ||| |||||||||||   | |||||||||||||||||||  |||||||||    
T  30848704 tccgttctaaaatgtaagcaaaaattggtcaacaaaaattaatgtattttgttcaaaatttgtacattagatacatcaacttatgttgatccatttttgc 30848605  T
Q  184 ttacattttggga 196  Q
    |||||||||||||    
T  30848604 ttacattttggga 30848592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 4423201 - 4423257
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 196  Q
    |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  4423201 aaaatttgtaccaaatacatcaacttatattgatccatttttgcttacattttggga 4423257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 5496917 - 5496857
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  5496917 tttggttcaaaatttgtaccaaataaatcaacttatattgactcatttttgtttacatttt 5496857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 51714291 - 51714236
Alignment:
Q  141 aaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 196  Q
    |||||||||||| ||| |||||||||||| ||  ||||||||||||||||||||||    
T  51714291 aaatttgtaccagataaatcaacttatgtcgatccatttttgcttacattttggga 51714236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 2734228 - 2734171
Alignment:
Q  149 accaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 206  Q
    ||||||||||| ||||| |||||||| |||||| |||| ||||||||| |||||||||    
T  2734228 accaaatacattaacttttgttgactaatttttacttatattttgggacggaaggagt 2734171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 24980729 - 24980631
Alignment:
Q  96 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    ||||| |||||||||||| ||| ||||| |||| |||  || ||  |||||||||  || |||||||||||||||||||  ||||||| ||||||||||    
T  24980729 aaaatgtaagcaaaaatttgtcaacaaaaattaatgtattttgtacaaaatttgtgtcagatacatcaacttatgttgatccatttttacttacatttt 24980631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 2871550 - 2871607
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggag 197  Q
    ||||||| ||| |||||||||||||| |||| ||  ||||||||||| ||||||||||    
T  2871550 aaaatttatacaaaatacatcaacttttgtttaccgatttttgcttatattttgggag 2871607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 13777193 - 13777136
Alignment:
Q  136 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    ||||||||||||  |||||||||||||||||  |||||||| ||||| ||| ||||||    
T  13777193 gtttaaaatttgatccaaatacatcaacttactttgactcacttttgattatattttg 13777136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 37783907 - 37783960
Alignment:
Q  141 aaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 194  Q
    |||||| ||||| ||||||||||||||||| |||| ||||  ||||||||||||    
T  37783907 aaatttataccacatacatcaacttatgttaactcgttttcacttacattttgg 37783960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 38940748 - 38940776
Alignment:
Q  84 tccctccgtcctaaaatataagcaaaaat 112  Q
    |||||||||||||||||||||||||||||    
T  38940748 tccctccgtcctaaaatataagcaaaaat 38940776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 88 - 196
Target Start/End: Original strand, 35938 - 36048
Alignment:
Q  88 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 185  Q
    |||||| ||||||||||  |||||||| || |||| | ||| |||  |||||  |||||||||| |||||||||||| |||| |||||||||||||| ||    
T  35938 tccgtcttaaaatataaataaaaattgatcaacaaccgttaatgtatttggtacaaaatttgtatcaaatacatcaatttatattgactcatttttgttt 36037  T
Q  186 acattttggga 196  Q
    |||||||||||    
T  36038 acattttggga 36048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 32221574 - 32221472
Alignment:
Q  96 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    ||||| |||||||||||| ||| |||||  ||| |||  |||||| ||||||||||||||||||||||| ||||| |||   ||||||||||||||||||    
T  32221574 aaaatgtaagcaaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacattttg 32221475  T
Q  194 gga 196  Q
    |||    
T  32221474 gga 32221472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 26914553 - 26914452
Alignment:
Q  96 aaaatataagcaaaaattggtctacaaacattagtgtttg--gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    ||||| ||||||||||||| || ||||| |||| ||| ||  ||| ||||||| ||| ||||||||||||||| |||| | |||||||||||||||||||    
T  26914553 aaaatgtaagcaaaaattgatcaacaaaaattaatgtatgtggttcaaaatttatactaaatacatcaacttaagttgtc-catttttgcttacattttg 26914455  T
Q  194 gga 196  Q
    |||    
T  26914454 gga 26914452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 31280159 - 31280269
Alignment:
Q  94 ctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattt 191  Q
    |||||||||||| |||||||| || |||||  ||| |||  |||||| ||||||||||||| |||||| || |||||||||  ||||||| ||||| |||    
T  31280159 ctaaaatataagtaaaaattgatcaacaaaatttaatgtatttggttcaaaatttgtaccatatacattaatttatgttgatccatttttccttaccttt 31280258  T
Q  192 tgggagggaag 202  Q
    ||||| |||||    
T  31280259 tgggatggaag 31280269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 47783122 - 47783184
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 194  Q
    ||||||| |||||||||| || |||||||  |||||||||||||||||||||||| |||||||    
T  47783122 tttggttcaaaatttgtatcagatacatcggcttatgttgactcatttttgcttatattttgg 47783184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 26104270 - 26104322
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    |||||||||| |||| | ||||| |||||||||||||||||||||||||||||    
T  26104270 aaaatttgtatcaaacaaatcaatttatgttgactcatttttgcttacatttt 26104322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 37330973 - 37331039
Alignment:
Q  134 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggaggga 200  Q
    ||||| ||||||||||| | |||| |||| ||||||| || |||||||||||||||||| |||||||    
T  37330973 tggttcaaaatttgtactagatacgtcaatttatgttaacccatttttgcttacattttcggaggga 37331039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 11256577 - 11256630
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    |||||||||| ||||||||||||| |||||| | ||||||||||||| ||||||    
T  11256577 aaaatttgtatcaaatacatcaacatatgttaattcatttttgcttatattttg 11256630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 32221526 - 32221575
Alignment:
Q  144 tttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 193  Q
    |||| ||||||||||| ||||| |||||||| ||||||||||||||||||    
T  32221526 tttgaaccaaatacattaacttttgttgactaatttttgcttacattttg 32221575  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 15282705 - 15282641
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 196  Q
    |||| ||||||||||||| || || ||||||||||||||||  |||||||| ||| |||||||||    
T  15282705 tttgatttaaaatttgtatcagattcatcaacttatgttgatccatttttgtttatattttggga 15282641  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 29637499 - 29637439
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    ||||||| |||||||||| |||||| || || ||||||||||| |||||| ||||||||||    
T  29637499 tttggttcaaaatttgtatcaaatatattaatttatgttgacttattttttcttacatttt 29637439  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 46733069 - 46733121
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    |||||||||| ||||| ||||| |||| ||||||| |||||||||||||||||    
T  46733069 aaaatttgtatcaaatgcatcagcttacgttgacttatttttgcttacatttt 46733121  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 46829047 - 46829082
Alignment:
Q  88 tccgtcctaaaatataagcaaaaattggtctacaaa 123  Q
    |||||||||||||||||||||||||||||| |||||    
T  46829047 tccgtcctaaaatataagcaaaaattggtcaacaaa 46829082  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 46829158 - 46829119
Alignment:
Q  84 tccctccgtcctaaaatataagcaaaaattggtctacaaa 123  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  46829158 tcccttcgtcctaaaatataagcaaaaattggtcaacaaa 46829119  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 18364220 - 18364273
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 194  Q
    |||||||||  || ||||||||||||||||| || ||||||||||||||||||||    
T  18364220 aaaatttgtgtcagatacatcaacttatgttaac-catttttgcttacattttgg 18364273  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 5307341 - 5307433
Alignment:
Q  104 agcaaaaattggtctacaaacattagtg--tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 194  Q
    |||||||||||||| | ||| |||| ||  ||| ||||||||||||||  | |||||||||| ||||| ||  |||||||| |||||||||||    
T  5307341 agcaaaaattggtcaataaaaattaatggatttcgtttaaaatttgtattagatacatcaacgtatgtagatccatttttgtttacattttgg 5307433  T

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Target: scaffold0097 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 37955 - 38015
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||| |||||| |||||||||    
T  37955 tttggtttaaaatttataccaaatacatcaatttatattgactcgtttttgtttacatttt 38015  T

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Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 94998 - 95050
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||||||||    
T  94998 aaaatttgtaccaaatacatcaacttatgttgaccaattttttattacatttt 95050  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 13218 - 13278
Alignment:
Q  132 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    ||||||||||||||||||| | |||||||||||||| || |||| ||||| ||||||||||    
T  13218 tttggtttaaaatttgtacaagatacatcaacttatattaactcgtttttacttacatttt 13278  T

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Target: scaffold0027; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 13223 - 13178
Alignment:
Q  149 accaaatacatcaacttatgttgactcatttttgcttacattttgg 194  Q
    ||||||||||| ||||| ||||||  ||||||||||||||||||||    
T  13223 accaaatacattaacttttgttgatccatttttgcttacattttgg 13178  T

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Target: scaffold0072 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 20467 - 20368
Alignment:
Q  95 taaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 192  Q
    |||||| ||||||||||||||||   ||| ||||  || | ||||||||||||||||  |||||||| || ||||||||||  |||||| ||||||||||    
T  20467 taaaatgtaagcaaaaattggtcagtaaaaattaacgtatgtggtttaaaatttgtattaaatacattaatttatgttgacatatttttacttacatttt 20368  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 51279 - 51225
Alignment:
Q  140 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 194  Q
    ||||||| ||||||||||||||||||||||||||    ||||||||| |||||||    
T  51279 aaaatttataccaaatacatcaacttatgttgacaatcttttgcttaaattttgg 51225  T

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