View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4750_low_14 (Length: 221)
Name: NF4750_low_14
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4750_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 4244144 - 4243955
Alignment:
| Q |
17 |
ttctagctgttttcattgttatttcaatgtctgcaataagcaactttaaacaaaacaaacaatttgataaattgtctcaagtgagcaatgatattcaaat |
116 |
Q |
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| T |
4244144 |
ttctagctgttttcattgttatttcaatgtctgcaataagcaactttaaacaaaacaaacaatttgataaattgtctcaagtgagcaatgatattcaaat |
4244045 |
T |
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| Q |
117 |
tgatttggttcgtagtgggcgccaacaaaaggtatcaatattcgatattgttgttggtgatgttgtttgtttgaagattggtgatcaagt |
206 |
Q |
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| T |
4244044 |
tgatttggttcgtagtgggcgccgacaaaaggtatcaatattcgatattgttgttggtgatgttgtttgtttgaagattggtgatcaagt |
4243955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 6187198 - 6187011
Alignment:
| Q |
19 |
ctagctgttttcattgttatttcaatgtctgcaataagcaactttaaacaaaacaaacaatttgataaattgtctcaagtgagcaatgatattcaaattg |
118 |
Q |
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| T |
6187198 |
ctagctgttttcatcgttatttcgatgtcatcaataagcaacttcaaacaaaacaaacaatttgataaattgtctcaagttagcaatgacattcaaattg |
6187099 |
T |
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| Q |
119 |
atttggttcgtagtgggcgccaacaaaaggtatcaatattcgatattgttgttggtgatgttgtttgtttgaagattggtgatcaagt |
206 |
Q |
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| T |
6187098 |
atttggttcgaagtggtcgtcggctaaaggtatctatatttgatattgttgttggtgatgttgtttgtttgaagattggtgatcaagt |
6187011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 6170129 - 6170065
Alignment:
| Q |
142 |
caaaaggtatcaatattcgatattgttgttggtgatgttgtttgtttgaagattggtgatcaagt |
206 |
Q |
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| T |
6170129 |
caaaagatatcgatctttgagattgttgttggtgatgttgtttttttgaatattggtgatcaagt |
6170065 |
T |
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