View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4750_low_5 (Length: 300)

Name: NF4750_low_5
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4750_low_5
NF4750_low_5
[»] chr1 (8 HSPs)
chr1 (142-282)||(47903947-47904084)
chr1 (14-101)||(47904122-47904209)
chr1 (193-282)||(47919859-47919948)
chr1 (207-282)||(47911045-47911120)
chr1 (207-282)||(47925089-47925164)
chr1 (44-84)||(47925253-47925293)
chr1 (14-77)||(47920043-47920106)
chr1 (43-77)||(47911205-47911239)
[»] chr2 (2 HSPs)
chr2 (44-95)||(42996777-42996828)
chr2 (166-273)||(42996888-42996991)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 142 - 282
Target Start/End: Complemental strand, 47904084 - 47903947
Alignment:
Q  142 caatttcacatgttattacaatgttgttgttattttaacattgatatataaataattgtatgtgcatgaaggaacattgttcacttcgagtgcacacata 241  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47904084 caatttcacatgttattacaatgttgtt---attttaacattgatatataaataattgtatgtgcatgaaggaacatggttcacttcgagtgcacacata 47903988  T
Q  242 gtgacggctgtaatagggtctggagtgttgtcgctggcatg 282  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47903987 gtgacggctgtaatagggtctggagtgttgtcgctggcatg 47903947  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 47904209 - 47904122
Alignment:
Q  14 agagtagtttttccatagaagatggaaagtatgatgatgatggtcgcataaaacgaacaggtttgtatcttatgtgaccaaaaccata 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47904209 agagtagtttttccatagaagatggaaagtatgatgatgatggtcgcatgaaacgaacaggtttgtatcttatgtgaccaaaaccata 47904122  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 47919948 - 47919859
Alignment:
Q  193 ataattgtatgtgcatgaaggaacattgttcacttcgagtgcacacatagtgacggctgtaatagggtctggagtgttgtcgctggcatg 282  Q
    |||||| ||||||||||||||| ||| | | ||| ||||||||||||||||||| ||||| ||||| ||||||||||||||  |||||||    
T  47919948 ataattttatgtgcatgaaggatcatgggtaactgcgagtgcacacatagtgactgctgtgataggatctggagtgttgtcattggcatg 47919859  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 47911120 - 47911045
Alignment:
Q  207 atgaaggaacattgttcacttcgagtgcacacatagtgacggctgtaatagggtctggagtgttgtcgctggcatg 282  Q
    |||||||||||| | | ||| | ||||||||||||||||| ||||||||||| ||||||||||||||  |||||||    
T  47911120 atgaaggaacatgggtgactgcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatg 47911045  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 47925164 - 47925089
Alignment:
Q  207 atgaaggaacattgttcacttcgagtgcacacatagtgacggctgtaatagggtctggagtgttgtcgctggcatg 282  Q
    |||||||||||| | | ||| |||||||||||||||||||| || ||||||| ||||||||||||||  |||||||    
T  47925164 atgaaggaacatggataactgcgagtgcacacatagtgacgactataataggatctggagtgttgtcattggcatg 47925089  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 47925293 - 47925253
Alignment:
Q  44 atgatgatgatggtcgcataaaacgaacaggtttgtatctt 84  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  47925293 atgatgatgatggtcgcgtaaaacgaacaggtttgtatctt 47925253  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 47920106 - 47920043
Alignment:
Q  14 agagtagtttttccatagaagatggaaagtatgatgatgatggtcgcataaaacgaacaggttt 77  Q
    ||||||| || |||||| | |||| ||| |||||||||||||||| ||||||||||||||||||    
T  47920106 agagtagcttctccatacatgatgaaaaatatgatgatgatggtctcataaaacgaacaggttt 47920043  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 47911239 - 47911205
Alignment:
Q  43 tatgatgatgatggtcgcataaaacgaacaggttt 77  Q
    |||||||||||||||| ||||||||||||||||||    
T  47911239 tatgatgatgatggtcacataaaacgaacaggttt 47911205  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 42996777 - 42996828
Alignment:
Q  44 atgatgatgatggtcgcataaaacgaacaggtttgtatcttatgtgaccaaa 95  Q
    |||||||||||||||||||||| ||||||||| |||||||| ||||||||||    
T  42996777 atgatgatgatggtcgcataaatcgaacaggtctgtatcttgtgtgaccaaa 42996828  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 42996888 - 42996991
Alignment:
Q  166 tgttgttattttaacattgatatataaataattgtatgtgcatgaaggaacattgttcacttcgagtgcacacatagtgacggctgtaatagggtctgga 265  Q
    |||| |||||||||||||||||    |||||||||||| |||||||||||| ||||| | |  | |||||  |||||| | || ||||||||| ||||||    
T  42996888 tgtttttattttaacattgata----aataattgtatgagcatgaaggaacgttgttaattgtgggtgcaaccatagtaatggttgtaataggatctgga 42996983  T
Q  266 gtgttgtc 273  Q
    ||||||||    
T  42996984 gtgttgtc 42996991  T

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