View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4750_low_7 (Length: 251)
Name: NF4750_low_7
Description: NF4750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4750_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 51861333 - 51861486
Alignment:
| Q |
1 |
tttattcacgggtaataacgaaccattgatttcaattatctccctcctgatttccgtcaaaaaccaagtgattgaattatccttaactgatatgcataca |
100 |
Q |
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| T |
51861333 |
tttattcacgtgtaataacgaaccattgatttcaattatctccatcctgatttccgccaaaaaccaagtgattgaattatccttaactgatatgcataca |
51861432 |
T |
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| Q |
101 |
cctcagcattttcgtggatcccgtggaaatttgttcgtgttatatagctgtgct |
154 |
Q |
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| T |
51861433 |
cctcagcattttcatggatcccgtggaaatttgttcgtgttatatagcagtgct |
51861486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 30791118 - 30791203
Alignment:
| Q |
156 |
aaatatcaatatcatcaaccctctgnnnnnnntcaatactaccacttatctacttttgttacctattaatcattgatgatcctatg |
241 |
Q |
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| T |
30791118 |
aaatatcaatatcatcaaccctctgaaaaaaatcaatactaccacttatctacttttgttacctattgatcattgatgatcctatg |
30791203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 37020831 - 37020962
Alignment:
| Q |
26 |
ttgatttcaattatctccctcc-tgatttccgtcaaaaaccaagtgattgaattatccttaactgatatgcatacacctcagcattttcgtggatcccgt |
124 |
Q |
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| T |
37020831 |
ttgatttcaatccactccctccctgatttccgccaaaaaagcagttattgaattatcctgaactaatatgcacacaactcagctttttcgtggttcccgt |
37020930 |
T |
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| Q |
125 |
ggaaatttgttcgtgttatatagctgtgctcaa |
157 |
Q |
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| T |
37020931 |
-gaatttttttcgtgtaacgtagctgtgctcaa |
37020962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 15996557 - 15996427
Alignment:
| Q |
26 |
ttgatttcaattatctccctcc-tgatttccgtcaaaaaccaagtgattgaattatccttaactgatatgcatacacctcagcattttcgtggatcccgt |
124 |
Q |
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|||||||||||| ||||||||| ||||||||| ||| || ||| | || ||||||| |||| ||||| |||||||| |||| ||| |||| || | | |
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| T |
15996557 |
ttgatttcaattctctccctccctgatttccgccaagaaggaaggaactgcattatccctaacaaatatgaatacacctaagcacttttgtggttctcat |
15996458 |
T |
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| Q |
125 |
ggaaatttgttcgtgttatatagctgtgctc |
155 |
Q |
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| T |
15996457 |
ggaaattcattcgtgttatatagctatgctc |
15996427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 8489057 - 8489136
Alignment:
| Q |
46 |
cctgatttccgtcaaaaac-caagtgattgaattatccttaactgatatgcatacacctcagcattttcgtggatcccgt |
124 |
Q |
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||||||||||| |||||| |||| ||||||||||||| |||| ||||||| ||| || ||||||||||||| |||||| |
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| T |
8489057 |
cctgatttccgccaaaaaagcaagatattgaattatcctgaactaatatgcacacagctaagcattttcgtggttcccgt |
8489136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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