View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4751-Insertion-2 (Length: 741)
Name: NF4751-Insertion-2
Description: NF4751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4751-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 649; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 6 - 735
Target Start/End: Complemental strand, 5447042 - 5446317
Alignment:
| Q |
6 |
cataaactagac--gagaatttcatagacactaattgattaacaaagctcaaacaattttacattgcttcacactcaagaaacttgttcttaaatctttt |
103 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5447042 |
cataaactagacaagagaatttcatagacactaattgattaacaaagttcaaacaattttacattgcttcacactcaagaaacttgttcttaaatctttt |
5446943 |
T |
|
| Q |
104 |
acctagcatcacaattagagaaacttcatactattttccaactcctgcttcttgaattcaaactcatcaatttctgccaattggtttctgtcaaaccatt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5446942 |
acctagcatcacaattagagaaacttcatactattttccaactcctgcttcttgaattcaaactcatcaatttctgccaattggtttctttcaaaccatt |
5446843 |
T |
|
| Q |
204 |
ctatactttcctccactaccttctcaagtttcttcactctctccctcgtttcataaacataattctcaaacaagttcttcgctttcaccttcttcctaac |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5446842 |
ctatactttcctccactaccttctcaagtttcttcactctctccctcatttcataaacataattctcaaacaagttctttgctttcaccttcttcctaac |
5446743 |
T |
|
| Q |
304 |
ctcctcatcctctgccttataccgctcggcatccctcatcattcttctcatctcttcaggactcaaccttccctccttgttggtgatagtgatcttctgt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446742 |
ctcctcatcctctgccttataccgctcggcatccctcatcattcttctcatctcttcaggactcaaccttccctccttgttggtgatagtgatcttctgt |
5446643 |
T |
|
| Q |
404 |
ttcaaccctattgtcttatcttcagcagtaacctccaaaattccattaacatcaacatcaaaacaaacattgatatttggaacctttcttggtactaaag |
503 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446642 |
ttcaaccctattgtcttatcttcagcagtaacctccaaaattccattaacatcaacatcaaaacaaacattgatatttggaacctttcttggtactaaag |
5446543 |
T |
|
| Q |
504 |
agcatcctgagagctcaaatttaccaagcaaaaagttgtcctcagtcttagcatgttctccttcatacactttgatcaaaagactatcttgattatcaca |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446542 |
agcatcctgagagctcaaatttaccaagcaaaaagttgtcctcagtcttagcatgttctccttcatacactttgatcaaaagactatcttgattatcaca |
5446443 |
T |
|
| Q |
604 |
gggctatagagaatacattctccctttttcgtaggggatcatagtattcctttggaatcaaaaacagacatgacaccgcctttagtttcaacaccaagac |
703 |
Q |
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|||||||||||||||||| | ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
5446442 |
-ggctatagagaatacatt-ttcctttttcgta-gggatcatagtatt-ctttggaatc-aaaacagacatgacaccacctttagtttcaacaccaagac |
5446348 |
T |
|
| Q |
704 |
taaaaggcataacatcccaacagtaacaagtc |
735 |
Q |
| |
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||||||||||||||| |||||||||||||||| |
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| T |
5446347 |
taaaaggcataacat-ccaacagtaacaagtc |
5446317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 453 - 553
Target Start/End: Original strand, 5432239 - 5432339
Alignment:
| Q |
453 |
catcaacatcaaaacaaacattgatatttggaacctttcttggtactaaagagcatcctgagagctcaaatttaccaagcaaaaagttgtcctcagtctt |
552 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||| |||||||||||||||||||||||||||| || |||||||| |
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| T |
5432239 |
catcaacatcaaaacaaacattgatatttggaacctttctaggtgttgaagagaatccatagagctcaaatttaccaagcaaaaagttatcatcagtctt |
5432338 |
T |
|
| Q |
553 |
a |
553 |
Q |
| |
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| |
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|
| T |
5432339 |
a |
5432339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 472 - 601
Target Start/End: Original strand, 5432810 - 5432936
Alignment:
| Q |
472 |
attgatatttggaacctttcttggtactaaagagcatcctgagagctcaaatttaccaagcaaaaagttgtcctcagtcttagcatgttctccttcatac |
571 |
Q |
| |
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||||||||||||||||||||| ||| || |||| ||| ||||| |||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
5432810 |
attgatatttggaacctttctaggtgctggagagattccagagagttcaaatttcccaagcaaaaagttatcct-agtcttagcatgttctccttcatac |
5432908 |
T |
|
| Q |
572 |
actttgatcaaaagactatcttgattatca |
601 |
Q |
| |
|
|||| ||||||| ||||| |||||||||| |
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|
| T |
5432909 |
actt--atcaaaacactattttgattatca |
5432936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 5431986 - 5432040
Alignment:
| Q |
25 |
tcatagacactaattgattaacaaagctcaaacaattttacattgcttcacactc |
79 |
Q |
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||||||||||||||||| ||| |||||||||| |||||||||||||||| |||| |
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| T |
5431986 |
tcatagacactaattgagtaatgaagctcaaactattttacattgcttcagactc |
5432040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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