View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4751_low_2 (Length: 573)
Name: NF4751_low_2
Description: NF4751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4751_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 12 - 558
Target Start/End: Original strand, 43587789 - 43588337
Alignment:
| Q |
12 |
tcattatcatcattatcatgaataaggaacaataatcaaagtaaactcatataatgcttgctaacaagaatgccnnnnnnnnnnnn--ggcataaatata |
109 |
Q |
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| T |
43587789 |
tcatcatcatcattatcatgaataaggaacaatattcaaagtaaactcatataatgcttgctaacaagaataccaacaaaaaaaaaaaggcataaatata |
43587888 |
T |
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| Q |
110 |
gattctaccttgtatctttctcccgaataatggtgggagaaaatatatcaaactcaagagacaatagtttcgacttggctttaaaagttagagcaggttt |
209 |
Q |
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| T |
43587889 |
gattctaccttgtatatttctcccgaataatggtgggagaaaatatatcaaactcaagagacaatagtttcgacttggctttaaaagttagagcaggttt |
43587988 |
T |
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| Q |
210 |
cacatccgacataatctcctcgatggtagcctggactttactaatctccttctcgaatacacctttaatcatctcagagttttggagatactccgcaaaa |
309 |
Q |
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| T |
43587989 |
cacatccgacataatctcctcgatagtatcctggactttcctcatctccttctcgaatacacctttaatcatctcagagttttggagatactctgcaaaa |
43588088 |
T |
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| Q |
310 |
gcttgatcagatatattctcttcagaacaatacaattgtaccttccttacttgcaaatccccaagaagctgttctctttcctcccttatcgattcaagac |
409 |
Q |
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| T |
43588089 |
gcttgatcagatatattctcttcagaacaatacaattgtaccttccttacttgcaaatccccaagaagctgttctctttcctcccttatcgattcaagac |
43588188 |
T |
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| Q |
410 |
gctcattgaaaatttccttcagttgtttctgcgtctcttcaagttctctaacatatgtttcattctcacgtaccaaagattccagtttatgcaaccacac |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43588189 |
gctcattgaaaatttccttcagttgtttctgcgtctcttcaagttctctaacatatgtttcattctcacgtaccaaagattccagtttatgcaaccacac |
43588288 |
T |
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| Q |
510 |
tgctccaacaaaataacctttgagttcttgaatcaagaacgaaaagatt |
558 |
Q |
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| T |
43588289 |
tgctccaacaaaataacctttgagttcttgaatcaagaacgaaaagatt |
43588337 |
T |
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