View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4751_low_3 (Length: 301)
Name: NF4751_low_3
Description: NF4751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4751_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 4736611 - 4736708
Alignment:
| Q |
9 |
gcaatgaaaaaagctcctcaagttgtacagagtacagacccgtgtgattcttcctagctaaattctacccacaacgatcatattttgtgccctaaaaa |
106 |
Q |
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| T |
4736611 |
gcaatgaaaaaagctcctcaagttgtagagagtacagacccgtgtgattcgtcctagctaaattctacccacaacgatcatattttgtgccctaaaaa |
4736708 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 4738644 - 4738713
Alignment:
| Q |
212 |
tttttataaattaatttccactagtattttgagcaaaattatttgtatcttcagagtgtaacttgtaact |
281 |
Q |
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| T |
4738644 |
tttttataaattaatttccactaatattttgagcaaaattatttgtatcttaagagtgtaacttgtaact |
4738713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 4738475 - 4738503
Alignment:
| Q |
98 |
ccctaaaaaggtcatttgtcaagaactat |
126 |
Q |
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| T |
4738475 |
ccctaaaaaggtcatttgtcaagaactat |
4738503 |
T |
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