View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4752-Insertion-13 (Length: 353)

Name: NF4752-Insertion-13
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4752-Insertion-13
NF4752-Insertion-13
[»] chr6 (1 HSPs)
chr6 (7-353)||(6723161-6723507)
[»] chr3 (5 HSPs)
chr3 (7-113)||(48025212-48025316)
chr3 (7-113)||(48024101-48024205)
chr3 (7-113)||(48024652-48024756)
chr3 (7-113)||(48027392-48027496)
chr3 (23-68)||(48707814-48707859)
[»] chr7 (2 HSPs)
chr7 (7-113)||(13108924-13109029)
chr7 (7-113)||(13111217-13111321)
[»] chr5 (2 HSPs)
chr5 (7-68)||(32797992-32798053)
chr5 (7-68)||(32800304-32800365)
[»] chr2 (3 HSPs)
chr2 (10-65)||(14662316-14662371)
chr2 (7-68)||(45338557-45338618)
chr2 (7-68)||(45336245-45336306)
[»] chr8 (2 HSPs)
chr8 (7-68)||(44731827-44731888)
chr8 (7-68)||(44734138-44734199)
[»] chr1 (2 HSPs)
chr1 (7-68)||(9535241-9535302)
chr1 (7-68)||(1550142-1550203)
[»] chr4 (2 HSPs)
chr4 (8-68)||(22804595-22804655)
chr4 (8-63)||(7231065-7231118)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 7 - 353
Target Start/End: Complemental strand, 6723507 - 6723161
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaacagtagataataatgaacaaaaacagcaaaaatatcaatc 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6723507 acaatctaattatgacacttacacttaaacaagcaacactttaattatgacagaaaacaacagtagataataatgaacaaaaatagcaaaaatatcaatc 6723408  T
Q  107 tccaacagatattacactccattaaatgttgagnnnnnnnttggataaaattttgcttaatgactttcaagaccattaatctaactatgtttaactccat 206  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6723407 tccaacagatattacactccattaaatgttgagaaaaagattggataaaattttgcttaatgactttcaagaccattaatctaactatgtttaactccat 6723308  T
Q  207 aattgaaatataaataatctccatatcaaaacttaagcagattacacatctcgctagctgagtccttttgcatacatgaaaagaattaatcataaacaac 306  Q
    || ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||| |||||||||||||||||     
T  6723307 aagtgaaatacaaataatctccatatcaaaacttaagcagattatacatctcgctagctgagaacttttgcatacatgaaaggaattaatcataaacaat 6723208  T
Q  307 acattttctttaggcaagactggtctatttttaacaaccaatattcc 353  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  6723207 acattttctttaggcaagcctggtctatttttaacaaccaatattcc 6723161  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 48025212 - 48025316
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaacagtagataataatgaacaaaaacagcaaaaatatcaatc 106  Q
    ||||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||| ||||||| |||||| ||| ||||||| |||||||||||||    
T  48025212 acaatctaattatgacatttatacataaacaagcaacactttaattatgacagaaaacagcagtagaaaataattaac-aaaacag-aaaaatatcaatc 48025309  T
Q  107 tccaaca 113  Q
    |||||||    
T  48025310 tccaaca 48025316  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 48024101 - 48024205
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaacagtagataataatgaacaaaaacagcaaaaatatcaatc 106  Q
    ||||||||||||||||||||| || |||||||  ||||||||||||||||||||||||| ||||||| |||||| ||| |||| || |||||||||||||    
T  48024101 acaatctaattatgacacttatacataaacaagtaacactttaattatgacagaaaacagcagtagaaaataattaac-aaaagag-aaaaatatcaatc 48024198  T
Q  107 tccaaca 113  Q
    |||||||    
T  48024199 tccaaca 48024205  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 48024652 - 48024756
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaacagtagataataatgaacaaaaacagcaaaaatatcaatc 106  Q
    ||||||||||||||||||||| || ||||||  ||||| |||||||||||||||||||| ||||||| |||||| ||| ||||||  |||||||||||||    
T  48024652 acaatctaattatgacacttatacataaacatgcaacattttaattatgacagaaaacagcagtagaaaataattaac-aaaaca-taaaaatatcaatc 48024749  T
Q  107 tccaaca 113  Q
    |||||||    
T  48024750 tccaaca 48024756  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 48027392 - 48027496
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaacagtagataataatgaacaaaaacagcaaaaatatcaatc 106  Q
    ||||||||||||||||||||| || ||||||| |||||||| ||||||| ||||||||  ||||| | |||||| ||| ||||||| |||||||||||||    
T  48027392 acaatctaattatgacacttatacataaacaagcaacacttaaattatggcagaaaacggcagtaaaaaataattaac-aaaacag-aaaaatatcaatc 48027489  T
Q  107 tccaaca 113  Q
    |||||||    
T  48027490 tccaaca 48027496  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 48707814 - 48707859
Alignment:
Q  23 acttacacttaaacaaacaacactttaattatgacagaaaacaaca 68  Q
    ||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  48707814 acttaaacttaaacaagcaacacattaattatgacagaaaataaca 48707859  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 13108924 - 13109029
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaacagtagataataatgaacaaaaacagcaaaaatatcaatc 106  Q
    ||||||||||||||||||||| |  ||||||| ||||||||||||||||||||||||||||| | || |||||| ||| ||||||  |||||||||||||    
T  13108924 acaatctaattatgacacttataaataaacaagcaacactttaattatgacagaaaacaacaatggaaaataattaac-aaaacaaaaaaaatatcaatc 13109022  T
Q  107 tccaaca 113  Q
    |||||||    
T  13109023 tccaaca 13109029  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 13111217 - 13111321
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaacagtagataataatgaacaaaaacagcaaaaatatcaatc 106  Q
    |||||||||||||| |||||  || ||||||| |||||||||||||||||||||||||| ||||| | | |||| ||| ||||||| |||||||||||||    
T  13111217 acaatctaattatggcacttctacataaacaagcaacactttaattatgacagaaaacagcagtaaaaagtaattaac-aaaacag-aaaaatatcaatc 13111314  T
Q  107 tccaaca 113  Q
    |||||||    
T  13111315 tccaaca 13111321  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 32798053 - 32797992
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 68  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  32798053 acaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 32797992  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 32800365 - 32800304
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 68  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  32800365 acaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 32800304  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 14662371 - 14662316
Alignment:
Q  10 atctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaaca 65  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||||||||||    
T  14662371 atctaattatgacacttatacataaacaagcaacactttaattatgacagaaaaca 14662316  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 45338618 - 45338557
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 68  Q
    ||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  45338618 acaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 45338557  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 45336306 - 45336245
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 68  Q
    ||||||||| ||||||||||| ||||| |||| |||||| ||||||||||||||||| ||||    
T  45336306 acaatctaaatatgacacttaaacttacacaagcaacacattaattatgacagaaaataaca 45336245  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 44731888 - 44731827
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 68  Q
    ||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  44731888 acaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 44731827  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 44734199 - 44734138
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 68  Q
    |||| |||| ||||||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  44734199 acaacctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 44734138  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 9535302 - 9535241
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 68  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||| |||||||||| ||||    
T  9535302 acaatctaattatgacacttaaacttaaacaagcaacacattaattttgacagaaaataaca 9535241  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 1550203 - 1550142
Alignment:
Q  7 acaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 68  Q
    ||||||||| ||||||||||| ||||| |||| |||||| |||||||||||| |||| ||||    
T  1550203 acaatctaactatgacacttaaacttatacaagcaacacattaattatgacataaaataaca 1550142  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 22804655 - 22804595
Alignment:
Q  8 caatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 68  Q
    ||||||||||||| |||||| |||||||||| |||| | |||||||||| |||||| ||||    
T  22804655 caatctaattatggcacttaaacttaaacaagcaacgcattaattatgagagaaaataaca 22804595  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 7231065 - 7231118
Alignment:
Q  8 caatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaa 63  Q
    |||||||||||||||||| ||  |||||||| ||||| | ||||||||||||||||    
T  7231065 caatctaattatgacactaac--ttaaacaagcaacaatctaattatgacagaaaa 7231118  T

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