View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752-Insertion-14 (Length: 186)
Name: NF4752-Insertion-14
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752-Insertion-14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 33368148 - 33367970
Alignment:
| Q |
8 |
ccatcctcctccacctctcctcttccaccctccataactaaagctctggttcactacgcctcctcctcgaactccaccaccaaatccatgtccttttcag |
107 |
Q |
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| T |
33368148 |
ccatcctcctccacctctcctcttccaccctccataactaaagctctcgttcactacgcctcctcctcgaactccaccaccaaatccatgtccttttcag |
33368049 |
T |
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| Q |
108 |
aaatcaacgccataacaaccactcttcaccttacaccaaaccccaacttccttatctttggtctcacccaagagtccct |
186 |
Q |
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| T |
33368048 |
aaatcaacgccataacaaccactcttcaccttacaccaaaccccaacttccttatctttggtctcacccaagagtccct |
33367970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 33372348 - 33372174
Alignment:
| Q |
9 |
catcctcctccacctctcctcttccaccctccataactaaagctctggttcactacgcctcctcctcgaactccaccaccaaatccatgtccttttcaga |
108 |
Q |
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|||||||| || |||||||||||||||||||| |||| ||||| || | ||||| |||||||||| ||| ||||||||||||||||||||||| ||| |
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| T |
33372348 |
catcctccaccgcctctcctcttccaccctccgtaaccaaagccctcctccactatgcctcctccttaaacaccaccaccaaatccatgtcctttgaaga |
33372249 |
T |
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| Q |
109 |
aatcaacgccataacaaccactcttcaccttacaccaaaccccaacttccttatctttggtctcacccaagagtc |
183 |
Q |
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| T |
33372248 |
aatcaacgctataacaaccactcttcaccttacaccacaccccaacttcctcatctttggtctcacccatgagtc |
33372174 |
T |
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