View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752-Insertion-2 (Length: 905)
Name: NF4752-Insertion-2
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 662; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 8 - 689
Target Start/End: Original strand, 34722541 - 34723222
Alignment:
| Q |
8 |
accacaaccgacactcctcacggcggcgataacgacaacgccgatcaaaacactcatcttctatcacaatcacaatcatcatcccaatcagaaccgccac |
107 |
Q |
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| T |
34722541 |
accacaaccgacactcctcacggcggcgataacgacaacgccgatcaaaacactcatcttctatcacaatcacaatcatcatcccaatcagaaccaccac |
34722640 |
T |
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| Q |
108 |
tccctccaccaccacccggattagcctggaagcttatcaaattacccgtctccgtaatttccggtagtctagggttaatctcaggagcaatcggtttcgg |
207 |
Q |
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| T |
34722641 |
tccctccaccaccacccggattagcctggaagcttatcaaattacccgtctccgtaatttccggtagtctagggttaatctcaggagcaatcggtttcgg |
34722740 |
T |
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| Q |
208 |
attatgggctgttggtggtgtactttcctattccctcggcttcgtcggtctgggcccgggatcatcctcagccgcggcttcctctgctggcacgccgttg |
307 |
Q |
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| T |
34722741 |
attatgggctgctggtggtgtactttcctattccctcggcttcgtaggtctgggcccgggatcatcctcagccgcggcttcctctgctggcacgccgttg |
34722840 |
T |
|
| Q |
308 |
gtttctgtatctgctgcgacaactgaagccatgcaatttgttgcggcttttgagagggattacggtggtggtgcctttaagccgaattttgtgagtgagg |
407 |
Q |
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| T |
34722841 |
gtttctgtatctgctgcgacaactgaagccatgcaatttgttgcggcttttgagagggattacggtggtggcgcctttaagccgaattttgtgagtgagg |
34722940 |
T |
|
| Q |
408 |
gtttcatggatgcgttacagaggtcgaggaattcgtttaagctgttgtttgtttacttgcattctcctgatcatcctgatacgccagagttttgtagaag |
507 |
Q |
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| T |
34722941 |
gtttcatggatgcgttacagaggtcgaggaattcgtttaagctgttgtttgtttacttgcattctcctgatcatcctgatacgccagagttttgtagaag |
34723040 |
T |
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| Q |
508 |
gacgctttgttccgaggtttttgttgagtttgtgaatcagaattttgtgtgttggggtgggagtattcgtgctagtgaagggtttaagatgagtaatagt |
607 |
Q |
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| T |
34723041 |
gacgctttgttccgaggtttttgttgagtttgtgaatcagaattttgtgtgttggggtgggagtattcgtgctagtgaagggtttaagatgagtaatagt |
34723140 |
T |
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| Q |
608 |
ttgaaggcttcgaggtttccattttgtgctcttgttatggctgcgactaatcagagaatcgcgcttcttcaacaggtatggc |
689 |
Q |
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| T |
34723141 |
ttgaaggcttcgaggtttccattttgtgctcttgttatggctgcgactaatcagagaatcgcgctacttcaacaggtatggc |
34723222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 723 - 905
Target Start/End: Original strand, 34723260 - 34723444
Alignment:
| Q |
723 |
ttgaaatggatgcaaatgggttaatggggtgttatgtttgtgtttgg--attatgcttgtggtgatttaagtgggctaaagttgtttttctatgtctatg |
820 |
Q |
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| T |
34723260 |
ttgaaatggatgcaaatgggttaatggggtgttatgtttgtgttgaataattatgcttgtggtgatttaagtgg-ctaaagttgtttttttatgtctatg |
34723358 |
T |
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| Q |
821 |
tatttggtggtggaaagaaacacacatccaaaatgcaatttgagttaactagttaacacac-tttggttggattcatgaacacacc |
905 |
Q |
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| T |
34723359 |
tatttcgtgttgtaaagaaacacacatccaaaatgcaatttgggttaactagttaacacacttttggttggattcatgaacacacc |
34723444 |
T |
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