View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752-Insertion-3 (Length: 767)
Name: NF4752-Insertion-3
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752-Insertion-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 691; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 12 - 767
Target Start/End: Complemental strand, 29822094 - 29821340
Alignment:
| Q |
12 |
gcactgtttaacaaaatacaaatagtatggaagtaaaatctatgaattgatcatgagaattgatgcctagagtggcattcaatcaatggccaccaaaaat |
111 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29822094 |
gcactgtttaagaaaatacaaatagtatggaagtaaaatctatgaattgatcatgagaattgatgcctagagtggcattcaatcaatggccaccaaaaat |
29821995 |
T |
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| Q |
112 |
caactaaattttagttgtgaagttcaattttttacttactatattttatgggttacctcatccttcttgtggttctcatgtctggcaaagaataagatta |
211 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29821994 |
caactaaattttagttgt-aagttcaattttttacttactacattttatgggttacctcatccttcttgtggttctcatgtctggcaaagaataagatta |
29821896 |
T |
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| Q |
212 |
ggatcatagaagcattgnnnnnnncattggaatcatcttgttctattaccattggtgtacatgttttagatttagtttgtggtagaacatcaacatagtt |
311 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29821895 |
ggatcatagaagcattgtttttttcattggaatcatcttgttctattaccattggtgtacatgttttagatttagcttgtggtagaacatcaacatagtt |
29821796 |
T |
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| Q |
312 |
caaaagtaaaaagatacgaaaatcgaaaatggagaacacacgatatttgatcacggagttgggccaattgtgctcaaatctctgactgcggagcgggctg |
411 |
Q |
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| T |
29821795 |
caaaagtaaaaagatacgaaaatcacaaatggagaacacactatatttgatcacggagttgggccaattgtgctcaaatctctgactgcggagcgggctg |
29821696 |
T |
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| Q |
412 |
cataatcaagtttctgagcataatatcatgaatctttatgtctgcaattttgcttggttattttttcccttccttttctgcttttggggcaaagcgaacc |
511 |
Q |
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| T |
29821695 |
cataatcaagtttgtgagcataatatcatgaatctttatgtctgcaattttgcttggttattttttcccttccttttctgcttttggggcaaagcgaacc |
29821596 |
T |
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| Q |
512 |
tttgaaatcaaatgaatgcataattcactatgagtttcttttcttatatgttcccctctttatgcaaagcttctttcatcaagttttattttcctgcagt |
611 |
Q |
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| T |
29821595 |
tttgaaatcaaatgaatgcataattcactatgagtttattttcttatatgttcccttctttatgcaaagcttctttcatcaagttttattttcctgcagt |
29821496 |
T |
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| Q |
612 |
gatgcttcatcaatcagtcaatcattaatcatatttgttcttcagctctacagccaggataaggagtgaggttctatctccctttcgggcagttaggatg |
711 |
Q |
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| T |
29821495 |
gatgcttcatcaatcagtcaatcattaatcatatttgttcttcagctctacagccaggataaggagtgaggttctatctccctttcgggcagttaggatg |
29821396 |
T |
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| Q |
712 |
ttcttttacaccgcttttgttgcaagtgcttctcttgggacactcatagcaatctc |
767 |
Q |
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| T |
29821395 |
ttcttttacaccgcttttgttgcaagtgcttctcttgggacactcatagcaatctc |
29821340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 308 - 383
Target Start/End: Original strand, 28026908 - 28026983
Alignment:
| Q |
308 |
agttcaaaagtaaaaagatacgaaaatcgaaaatggagaacacacgatatttgatcacggagttgggccaattgtg |
383 |
Q |
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| T |
28026908 |
agttcaaaagtaaaaagatacgaaaaacacaaatagagaacacaagatatttgatcgtggagttcggccaattgtg |
28026983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 26737767 - 26737722
Alignment:
| Q |
338 |
aaatggagaacacacgatatttgatcacggagttgggccaattgtg |
383 |
Q |
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| T |
26737767 |
aaatagagaacacacgatatttgatcacggagttcggccaattgtg |
26737722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 400
Target Start/End: Original strand, 24546950 - 24547031
Alignment:
| Q |
319 |
aaaaagatacgaaaatcgaaaatggagaacacacgatatttgatcacggagttgggccaattgtgctcaaatctctgactgc |
400 |
Q |
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| T |
24546950 |
aaaaagatacgaaaaacgcaaatagagaaaacatgatatttgatctcggagttcggccaagtgtgtctatatctctgactgc |
24547031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 27318623 - 27318576
Alignment:
| Q |
309 |
gttcaaaagtaaaaagatacgaaaatcgaaaatggagaacacacgata |
356 |
Q |
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| T |
27318623 |
gttcaaaagtaaaaagatacaaaaatcgtaaagagagaacacacgata |
27318576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 396
Target Start/End: Original strand, 32767136 - 32767238
Alignment:
| Q |
294 |
tagaacatcaacatagttcaaaagtaaaaagatacg-aaaatcgaaaatggagaacacacgatatttgatcacggagttgggccaattgtgctcaaatct |
392 |
Q |
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||||||| ||||| || | ||||||||||| ||||| |||| || ||| ||||||| | |||||||||||||||| || ||||||||||||| | |||| |
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| T |
32767136 |
tagaacagcaacacagatgaaaagtaaaaa-atacggaaaaacgcaaacagagaacaaatgatatttgatcacggaattcggccaattgtgcttacatct |
32767234 |
T |
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| Q |
393 |
ctga |
396 |
Q |
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|||| |
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| T |
32767235 |
ctga |
32767238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 294 - 384
Target Start/End: Complemental strand, 2447438 - 2447349
Alignment:
| Q |
294 |
tagaacatcaacatagttcaaaagtaaaaagatacgaaaatcgaaaatggagaacacacgatatttgatcacggagttgggccaattgtgc |
384 |
Q |
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||||||| |||| | || |||||||||||||||||||||| | ||| || |||||||| || |||||||||||| | |||||||||||| |
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| T |
2447438 |
tagaacagcaacttggtgcaaaagtaaaaagatacgaaaaacacaaacagaaaacacacg-tacttgatcacggaggtcggccaattgtgc |
2447349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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