View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752-Insertion-4 (Length: 692)
Name: NF4752-Insertion-4
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 4e-86; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 143 - 432
Target Start/End: Complemental strand, 32809244 - 32808961
Alignment:
| Q |
143 |
atatatgccacaatgtgagagactcacatggtcaagttattttgcttcaacnnnnnnnctcaagtatggaggatcctcacgacaaggagaacacaacacc |
242 |
Q |
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| T |
32809244 |
atatataccacaatgtgagagactcacatggtcaagttattttgcttcaaccttttt-ctcaagtatggaggagcctcacgacaaggagaccacaacacc |
32809146 |
T |
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| Q |
243 |
gttggaggcaaggtgtgcattgaccgtcaaggctgtaaccttgggcatgggtggaatcggtaaacaggaggtgaa-tatatctctgcattttgttcatca |
341 |
Q |
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| T |
32809145 |
gttggaggcaaggtgtgca---------aaggctgcaaccttgggcatgggtggaatcggtaaacaggtagtgatctctatctctgcattttgttcatca |
32809055 |
T |
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| Q |
342 |
cttgctcctgctttctcttcttaacttgctacatgtttttctcttctctttattgcatacatttcttt---ccctatcttttccttgataaatt |
432 |
Q |
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| T |
32809054 |
cttgctcttgctttctcttcttaacttgctatatgtttttctcttctctttattgcatacattttttttcaccctatcttttacttaataaatt |
32808961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 201 - 516
Target Start/End: Complemental strand, 32269144 - 32268829
Alignment:
| Q |
201 |
ctcaagtatggaggatcctcacgacaaggagaacacaacaccgttggaggcaaggtgtgcattgaccgtcaaggctgtaaccttgggcatgggtggaatc |
300 |
Q |
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| T |
32269144 |
ctcaagtatggaggagcctcacgacaaagagaacacaacaccgttggaggcaag-tgtgcaatgaccgtcaaggttgcaaccttgggcatgggtggaatc |
32269046 |
T |
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| Q |
301 |
ggtaaacaggaggtgaatatatctctgcattttgttcatcacttgctcctgctttctcttcttaacttgctacatgtttttct--cttctctttattgca |
398 |
Q |
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| T |
32269045 |
ggtaaacaggtagtgaatctatttatgcattttgttcatcacttgctcttgctttctcttattaacttgctatatggttttctagctcctctttattgca |
32268946 |
T |
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| Q |
399 |
tacatttcttt--ccctatcttttccttgataaattccagttttaggttaaatgttgtttcagcattttgctgactaacactaaactgaaacttaatgga |
496 |
Q |
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| T |
32268945 |
tacatttttttcaccctatcttttccttgataaactttagat---gaaataatgatgttacatcattttgctgactaatactaaactgaaacttaatgga |
32268849 |
T |
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| Q |
497 |
gagaattaatatgaagattg |
516 |
Q |
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| T |
32268848 |
gagaattaacattaagattg |
32268829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 202 - 432
Target Start/End: Complemental strand, 32275452 - 32275215
Alignment:
| Q |
202 |
tcaagtatggaggatcctcacgacaaggagaacacaacaccgttggaggcaaggtgtgcattgaccgtcaaggctgtaaccttgggcatgggtggaatcg |
301 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| |
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| T |
32275452 |
tcaagtatggaggagcctcacgacaaggagaacccaacaccgttggaggcaaggtgtgcaatgaccgtcaaggctgcaagcttgggcatgggtggaatcg |
32275353 |
T |
|
| Q |
302 |
gtaaacaggaggtgaatatatctctgcattttgttcatcacttgctcctgctttctcttcttaacttgctacatgt----ttttctcttctctttattgc |
397 |
Q |
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| T |
32275352 |
gtaaacaggtagtgaatctatctctgcattttattcatcacttgctcttgctttctcttcttaacttgctatatgtaaaattttctcttctctttattgc |
32275253 |
T |
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| Q |
398 |
atacatttcttt---ccctatcttttccttgataaatt |
432 |
Q |
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| T |
32275252 |
atacattttttttcaccctatcttttccttaataaatt |
32275215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 446 - 515
Target Start/End: Complemental strand, 32808923 - 32808854
Alignment:
| Q |
446 |
aaatgttgtttcagcattttgctgactaacactaaactgaaacttaatggagagaattaatatgaagatt |
515 |
Q |
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| T |
32808923 |
aaatgatgttacagcattttgctgactaatacaaaactaaaacttaatggagagaattaatattaagatt |
32808854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 32809277 - 32809241
Alignment:
| Q |
97 |
atcatttatctgcctctcaccaatcttacaaatatat |
133 |
Q |
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| T |
32809277 |
atcatttatctccctctcaccaatcttacaaatatat |
32809241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 32269212 - 32269167
Alignment:
| Q |
97 |
atcatttatctgcctctcaccaatcttacaaatatattcccatgtg |
142 |
Q |
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| T |
32269212 |
atcatttatctccctctcaccagtcttacaaatttatacccatgtg |
32269167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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