View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4752-Insertion-5 (Length: 677)

Name: NF4752-Insertion-5
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4752-Insertion-5
NF4752-Insertion-5
[»] chr2 (5 HSPs)
chr2 (8-677)||(37065473-37066140)
chr2 (627-677)||(44132602-44132652)
chr2 (618-677)||(11133072-11133132)
chr2 (619-677)||(14307733-14307791)
chr2 (621-677)||(18065254-18065310)
[»] chr7 (6 HSPs)
chr7 (620-677)||(10474551-10474608)
chr7 (617-677)||(7465462-7465522)
chr7 (617-677)||(11808034-11808094)
chr7 (618-677)||(43635585-43635644)
chr7 (619-677)||(32814825-32814883)
chr7 (619-669)||(37410528-37410578)
[»] chr8 (11 HSPs)
chr8 (617-677)||(216186-216246)
chr8 (617-677)||(692746-692806)
chr8 (617-677)||(696955-697015)
chr8 (617-677)||(729809-729869)
chr8 (617-677)||(853704-853764)
chr8 (617-677)||(220401-220461)
chr8 (617-677)||(689556-689616)
chr8 (617-677)||(734024-734084)
chr8 (617-677)||(857920-857980)
chr8 (621-677)||(26657856-26657912)
chr8 (618-677)||(33982186-33982246)
[»] chr1 (10 HSPs)
chr1 (617-677)||(47645835-47645895)
chr1 (618-677)||(9768848-9768907)
chr1 (618-677)||(18003813-18003872)
chr1 (618-677)||(42801876-42801935)
chr1 (618-677)||(42908768-42908827)
chr1 (618-677)||(52961121-52961180)
chr1 (618-664)||(51917554-51917600)
chr1 (620-677)||(5862127-5862184)
chr1 (620-677)||(11238067-11238124)
chr1 (621-661)||(37693955-37693995)
[»] chr5 (5 HSPs)
chr5 (618-677)||(7147058-7147117)
chr5 (616-677)||(42801480-42801541)
chr5 (617-677)||(36742006-36742066)
chr5 (619-673)||(11246537-11246591)
chr5 (618-677)||(6806679-6806739)
[»] chr4 (6 HSPs)
chr4 (617-677)||(27921892-27921952)
chr4 (620-676)||(49319392-49319448)
chr4 (621-677)||(52556714-52556770)
chr4 (618-675)||(12820446-12820504)
chr4 (621-677)||(20610739-20610795)
chr4 (630-677)||(25259456-25259504)
[»] scaffold0168 (1 HSPs)
scaffold0168 (618-677)||(34072-34131)
[»] chr6 (2 HSPs)
chr6 (618-677)||(25064708-25064767)
chr6 (618-677)||(34524872-34524931)
[»] chr3 (6 HSPs)
chr3 (617-664)||(2903704-2903751)
chr3 (619-664)||(3973300-3973345)
chr3 (619-664)||(3996531-3996576)
chr3 (618-675)||(24130556-24130613)
chr3 (620-677)||(24160567-24160624)
chr3 (621-677)||(4478407-4478463)


Alignment Details
Target: chr2 (Bit Score: 592; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 8 - 677
Target Start/End: Complemental strand, 37066140 - 37065473
Alignment:
Q  8 catgtactccatgaagaggttgaacaagtgcttgttattctcctttgaaaagttgcaacctttgtaggtaactatgtaaggagaggacagagaagaaaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37066140 catgtactccatgaagaggttgaacaagtgcttgttattctcctttgaaaagttgcaacctttgtaggtaactatgtaaggagaggacagagaagaaaga 37066041  T
Q  108 attctttgttctctctggagttggtttgagtttggtagtgatgtctccgttgatttaaccgcggagacatcggtggagcgacgagaggtggcgaggtaga 207  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37066040 attctttgttcactctggagttggtttgagtttggtagtgatgtctccgctgatttaaccgcggagacatcggtggagcgacgagaggtggcgaggtaga 37065941  T
Q  208 cggtggcggatgagccatgtccgatgatgttgcctctagtccactccatctccatattttgtgtttaaggctatagtttgatattgcggcctttatataa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37065940 cggtggcggatgagccatgtccgatgatgttgcctctagtccactccatctccatattttgtgtttaaggctatggtttgatattgcggcctttatataa 37065841  T
Q  308 tagttgaaaaaataggcacactttgaatatgagttttaaaaggattaattttattggttggtttacttaattagttgaagctattttccctttagagggg 407  Q
    ||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37065840 tagttgaaaaaataggcacactttgaatatgagttttta---gattaattttattggttggtttacttaattagttgaagctattttccctttagagggg 37065744  T
Q  408 agtgagtgttacttcaaaggggagtttaggacgtgttcaaatttgggtggttgtggcagcttagttggcaatttattattatatggcacgtggaaaattt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37065743 agtgagtgttacttcaaaggggagtttaggacgtgttcaaatttgggtggttgtggcagcttagttggcaatttattattatatggcacgtggaaaattt 37065644  T
Q  508 aacctagaagttttttgtatagtgtgtgaattattacatccatctagataccattttaagttgatataaacgaaactagacttctatctctt-nnnnnnn 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||            
T  37065643 aacctagaagttttttgtatagtgtgtgaattattacatccatctagataccaatttaagttgatataaacgaaactagacttctatctcttaaaaaaaa 37065544  T
Q  607 tgtgattgggtcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  37065543 tgtgattgggtcccgtgagcatagctctgttggtatggacatgcattgttatatgcagtggtcggggttcg 37065473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 627 - 677
Target Start/End: Complemental strand, 44132652 - 44132602
Alignment:
Q  627 atagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||||||||||| | |||||| ||||||||||||||| ||||||||||||    
T  44132652 atagctcagttggcagagacatgcattgttatatgcagaggtcggggttcg 44132602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 618 - 677
Target Start/End: Original strand, 11133072 - 11133132
Alignment:
Q  618 cccgtgatcatagctcagttggtatagaca-tacattgttatatgcagtggtcggggttcg 677  Q
    ||||||| ||||||||||||||||  |||| | ||||||||||||||| ||||||||||||    
T  11133072 cccgtgagcatagctcagttggtagggacaatgcattgttatatgcaggggtcggggttcg 11133132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 677
Target Start/End: Complemental strand, 14307791 - 14307733
Alignment:
Q  619 ccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||| ||| ||||||||||||  ||||| ||||||||||||||| ||||| ||||||    
T  14307791 ccgtgagcatggctcagttggtagggacatgcattgttatatgcaggggtcgaggttcg 14307733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 621 - 677
Target Start/End: Original strand, 18065254 - 18065310
Alignment:
Q  621 gtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||| |||||||||||||||| || ||| ||||||||||||||| ||| | ||||||    
T  18065254 gtgagcatagctcagttggtagaggcatgcattgttatatgcaggggttgaggttcg 18065310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 620 - 677
Target Start/End: Complemental strand, 10474608 - 10474551
Alignment:
Q  620 cgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||| ||||||||||||    
T  10474608 cgtgagcatagttcagttggtagagacatacattgttatatgcaggggtcggggttcg 10474551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 677
Target Start/End: Original strand, 7465462 - 7465522
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||| |||||||||||||| | |||||| |||| |||||||||| || |||||||||    
T  7465462 tcccgtgagcatagctcagttggcagagacatgcattattatatgcaggggccggggttcg 7465522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 677
Target Start/End: Original strand, 11808034 - 11808094
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||| | ||||||| ||||||  ||||| ||||||||||||||| ||||||||||||    
T  11808034 tcccgtgagcttagctcaattggtagggacatgcattgttatatgcaggggtcggggttcg 11808094  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 677
Target Start/End: Original strand, 43635585 - 43635644
Alignment:
Q  618 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||||| |||| ||||||||| | | |||| ||||||||||||||| ||||||||||||    
T  43635585 cccgtgagcataactcagttggcagaaacatgcattgttatatgcagcggtcggggttcg 43635644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 677
Target Start/End: Original strand, 32814825 - 32814883
Alignment:
Q  619 ccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||| ||||||||||||||||  ||||| |||| |||||||||| |||||| |||||    
T  32814825 ccgtgagcatagctcagttggtagggacatgcattattatatgcaggggtcggagttcg 32814883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 669
Target Start/End: Complemental strand, 37410578 - 37410528
Alignment:
Q  619 ccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtc 669  Q
    |||||| ||||||||||||||||  ||||| ||||||||||||||| ||||    
T  37410578 ccgtgagcatagctcagttggtaaggacatgcattgttatatgcaggggtc 37410528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 216246 - 216186
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||||| |||| |||||||    
T  216246 tcccgtgagcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcg 216186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 692806 - 692746
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||||| |||| |||||||    
T  692806 tcccgtgagcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcg 692746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 697015 - 696955
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||||| |||| |||||||    
T  697015 tcccgtgagcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcg 696955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 729869 - 729809
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||||| |||| |||||||    
T  729869 tcccgtgagcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcg 729809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 853764 - 853704
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||||| |||| |||||||    
T  853764 tcccgtgagcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcg 853704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 220461 - 220401
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||| |||||||||||||| |  ||||| || |||||||||||| |||| |||||||    
T  220461 tcccgtgagcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcg 220401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 689616 - 689556
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||| |||||||||||||| |  ||||| || |||||||||||| |||| |||||||    
T  689616 tcccgtgagcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcg 689556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 734084 - 734024
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||| |||||||||||||| |  ||||| || |||||||||||| |||| |||||||    
T  734084 tcccgtgagcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcg 734024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 857980 - 857920
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||| |||||||||||||| |  ||||| || |||||||||||| |||| |||||||    
T  857980 tcccgtgagcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcg 857920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 621 - 677
Target Start/End: Original strand, 26657856 - 26657912
Alignment:
Q  621 gtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||| ||||||||||||||||  ||||| ||||||||||||||| |  |||||||||    
T  26657856 gtgagcatagctcagttggtagggacatgcattgttatatgcagggaccggggttcg 26657912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 618 - 677
Target Start/End: Original strand, 33982186 - 33982246
Alignment:
Q  618 cccgtgatcatagctcagttggtatagacat-acattgttatatgcagtggtcggggttcg 677  Q
    ||||||| |||||||||||||  | | |||| |||||||||||||||| ||||||||||||    
T  33982186 cccgtgagcatagctcagttgacagaaacattacattgttatatgcaggggtcggggttcg 33982246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 47645895 - 47645835
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||| ||| |||||||||||||| | |||||| ||||||||||||||| ||||||||||||    
T  47645895 tcccatgagcatagctcagttggcagagacatgcattgttatatgcagaggtcggggttcg 47645835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 618 - 677
Target Start/End: Complemental strand, 9768907 - 9768848
Alignment:
Q  618 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||||| |||||||||||||| |  ||||| ||||||||||||||| ||||||||||||    
T  9768907 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggtcggggttcg 9768848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 677
Target Start/End: Original strand, 18003813 - 18003872
Alignment:
Q  618 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||||| |||||||||||||| |  ||||| ||||||||||||||| || |||||||||    
T  18003813 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcg 18003872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 677
Target Start/End: Original strand, 42801876 - 42801935
Alignment:
Q  618 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||||| |||||||||||||  | |||||| ||||||||||||||| ||| ||||||||    
T  42801876 cccgtgaacatagctcagttgacagagacatgcattgttatatgcagaggttggggttcg 42801935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 677
Target Start/End: Original strand, 42908768 - 42908827
Alignment:
Q  618 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||||| | |||||||||||| |  ||||| ||||||||||||||| ||||||||||||    
T  42908768 cccgtgagcttagctcagttggcagggacatgcattgttatatgcaggggtcggggttcg 42908827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 677
Target Start/End: Complemental strand, 52961180 - 52961121
Alignment:
Q  618 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||||| |||||||||||||| |  ||||| ||||||||||||||| || |||||||||    
T  52961180 cccgtgagcatagctcagttggcaaggacatgcattgttatatgcaggggccggggttcg 52961121  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 664
Target Start/End: Complemental strand, 51917600 - 51917554
Alignment:
Q  618 cccgtgatcatagctcagttggtatagacatacattgttatatgcag 664  Q
    ||||||| |||||||||||||| |||||||| |||| ||||||||||    
T  51917600 cccgtgagcatagctcagttggcatagacatgcattattatatgcag 51917554  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 620 - 677
Target Start/End: Original strand, 5862127 - 5862184
Alignment:
Q  620 cgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||| |||||||||||||| |  ||||| |||||||||||| || ||||||||||||    
T  5862127 cgtgaacatagctcagttggcagggacatgcattgttatatgtagaggtcggggttcg 5862184  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 620 - 677
Target Start/End: Complemental strand, 11238124 - 11238067
Alignment:
Q  620 cgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||| |||||||||| ||| || ||||| |||| |||||||||| ||||||||||||    
T  11238124 cgtgagcatagctcagatggcatggacatgcattattatatgcaggggtcggggttcg 11238067  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 621 - 661
Target Start/End: Complemental strand, 37693995 - 37693955
Alignment:
Q  621 gtgatcatagctcagttggtatagacatacattgttatatg 661  Q
    |||| ||||||||||| |||| |||||||||||||||||||    
T  37693995 gtgagcatagctcagtcggtagagacatacattgttatatg 37693955  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 618 - 677
Target Start/End: Complemental strand, 7147117 - 7147058
Alignment:
Q  618 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||||| ||||||||||||||||  ||||| |||| |||||||||| ||||||||||||    
T  7147117 cccgtgagcatagctcagttggtaaggacatgcattattatatgcaggggtcggggttcg 7147058  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 677
Target Start/End: Complemental strand, 42801541 - 42801480
Alignment:
Q  616 gtcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||||||||||||||||||||||    || |||| |||||||||| ||||||||||||    
T  42801541 gtcccgtgatcatagctcagttggtatgataatgcattattatatgcaggggtcggggttcg 42801480  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 36742066 - 36742006
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||| |||||||||||||| | ||||||  |||||||||||||| | ||||||||||    
T  36742066 tcccgtgagcatagctcagttggcagagacatgaattgttatatgcagggatcggggttcg 36742006  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 673
Target Start/End: Complemental strand, 11246591 - 11246537
Alignment:
Q  619 ccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcgggg 673  Q
    |||||| |||||||||||||| |  ||||| ||||||||||||||| ||||||||    
T  11246591 ccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggtcgggg 11246537  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 618 - 677
Target Start/End: Complemental strand, 6806739 - 6806679
Alignment:
Q  618 cccgtgatcatagctcagttggtatagaca-tacattgttatatgcagtggtcggggttcg 677  Q
    ||||||| |||||||||||||| | ||||| | ||||||||||||||| ||||||| ||||    
T  6806739 cccgtgagcatagctcagttggcagagacaatgcattgttatatgcaggggtcgggattcg 6806679  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 677
Target Start/End: Original strand, 27921892 - 27921952
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||||||| ||||||||||||||||  ||||| |||| |||||||||| || |||||||||    
T  27921892 tcccgtgagcatagctcagttggtagggacatgcattattatatgcaggggccggggttcg 27921952  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 620 - 676
Target Start/End: Original strand, 49319392 - 49319448
Alignment:
Q  620 cgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttc 676  Q
    ||||| |||||||||||||| || ||||| |||| |||||||||| |||||||||||    
T  49319392 cgtgagcatagctcagttggcatggacatgcattattatatgcaggggtcggggttc 49319448  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 677
Target Start/End: Complemental strand, 52556770 - 52556714
Alignment:
Q  621 gtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||| ||||||||||||| ||   |||||||||||||||||||| ||||||||||||    
T  52556770 gtgaacatagctcagttgataggaacatacattgttatatgcaggggtcggggttcg 52556714  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 675
Target Start/End: Complemental strand, 12820504 - 12820446
Alignment:
Q  618 cccgtgatcatagctcagttggtatagaca-tacattgttatatgcagtggtcggggtt 675  Q
    ||||||| |||||||||||||| | ||||| | ||||||||||||||| ||||||||||    
T  12820504 cccgtgagcatagctcagttggcagagacaatgcattgttatatgcaggggtcggggtt 12820446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 621 - 677
Target Start/End: Original strand, 20610739 - 20610795
Alignment:
Q  621 gtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||| |||||||||||||| |  ||||| ||||||||||||||| || |||||||||    
T  20610739 gtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcg 20610795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 677
Target Start/End: Original strand, 25259456 - 25259504
Alignment:
Q  630 gctcagttggtatagac-atacattgttatatgcagtggtcggggttcg 677  Q
    |||||||||| | |||| |||||||||||||||||| ||||||||||||    
T  25259456 gctcagttggcagagacgatacattgttatatgcagaggtcggggttcg 25259504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 677
Target Start/End: Complemental strand, 34131 - 34072
Alignment:
Q  618 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||||| |||||||||||||| |  ||||| ||||||||||||||| || |||||||||    
T  34131 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcg 34072  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 677
Target Start/End: Complemental strand, 25064767 - 25064708
Alignment:
Q  618 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||||| ||||| ||||||||||| ||||| |||| |||||||||| ||| ||||||||    
T  25064767 cccgtgagcatagttcagttggtatggacatgcattattatatgcaggggttggggttcg 25064708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 677
Target Start/End: Original strand, 34524872 - 34524931
Alignment:
Q  618 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||||| |||||||||||||| |  ||||| ||||||||||||||| || |||||||||    
T  34524872 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcg 34524931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 664
Target Start/End: Original strand, 2903704 - 2903751
Alignment:
Q  617 tcccgtgatcatagctcagttggtatagacatacattgttatatgcag 664  Q
    |||||||| ||||||| |||||| || |||||||||||||||||||||    
T  2903704 tcccgtgaacatagcttagttggcatggacatacattgttatatgcag 2903751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 664
Target Start/End: Original strand, 3973300 - 3973345
Alignment:
Q  619 ccgtgatcatagctcagttggtatagacatacattgttatatgcag 664  Q
    |||||| ||||||||||||||||  ||||| |||||||||||||||    
T  3973300 ccgtgagcatagctcagttggtagggacatgcattgttatatgcag 3973345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 664
Target Start/End: Complemental strand, 3996576 - 3996531
Alignment:
Q  619 ccgtgatcatagctcagttggtatagacatacattgttatatgcag 664  Q
    |||||| ||||||||||||||||  ||||| |||||||||||||||    
T  3996576 ccgtgagcatagctcagttggtagggacatgcattgttatatgcag 3996531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 618 - 675
Target Start/End: Original strand, 24130556 - 24130613
Alignment:
Q  618 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggtt 675  Q
    ||||||| |||| ||||||||| |  ||||||||||||||||||||| || |||||||    
T  24130556 cccgtgagcataactcagttggcagggacatacattgttatatgcaggggacggggtt 24130613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 620 - 677
Target Start/End: Complemental strand, 24160624 - 24160567
Alignment:
Q  620 cgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    ||||| |||| ||||||||| | |||||| || |||||||||||| ||||||||||||    
T  24160624 cgtgagcataactcagttggcagagacatgcactgttatatgcaggggtcggggttcg 24160567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 621 - 677
Target Start/End: Complemental strand, 4478463 - 4478407
Alignment:
Q  621 gtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 677  Q
    |||| |||||||||||| ||||  |||| |||| |||||||||| ||||||||||||    
T  4478463 gtgagcatagctcagttagtatgaacatgcattattatatgcaggggtcggggttcg 4478407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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