View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4752-Insertion-6 (Length: 571)
Name: NF4752-Insertion-6
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752-Insertion-6 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 7 - 570
Target Start/End: Complemental strand, 10031053 - 10030482
Alignment:
| Q |
7 |
attcttttgctatttattatactgaaacttattgtttttcattttcacttttacacaaatgagtgtaggaaatttgatgttttgttcgaattgactacaa |
106 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10031053 |
attcttttgcttcttattatactgaaacttattgtttttccttttcacttttacaaaaatgagtgtaggaaagttgatgttttgttcgaattgactacaa |
10030954 |
T |
|
| Q |
107 |
gaaatgaaagtttataggcaagtttttcctagc-ttttaagttttaattgttaaagtagttgatgttgttttcatagtgtgtgtgcgcgcg--tagtgca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
10030953 |
gaaatgaaagtttataggcaagtttttcctagccttttaagttttaattgttaaagtagttgatgttgttttcatagtgtgtgcgcgcgcgcgtagtgca |
10030854 |
T |
|
| Q |
204 |
tatactc----gctacatagatatactcttgttcttttatatgatcagtaattgctatgttttgcttagattgatgttggagatttgattatgttatgat |
299 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10030853 |
tatactcaattgctacatagatatactcttgttcttttatatgatctgtaattgctatgttttgcttagattgatgttggagatttgattattttatgat |
10030754 |
T |
|
| Q |
300 |
gaatgactctaattttcttcatttgcttttatatactcttcatttattttatatatctgaattctgatattgtggattggtgctcctaagccaatacatg |
399 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10030753 |
gattgactctaattttcttcatttgcttttatatactcttcatttattttatatatctgaattctgatattgtggattggtgctcctaagccaatacatg |
10030654 |
T |
|
| Q |
400 |
agtttaatcataccataaaaaataatattttggagtt-attgaaaatctgcatattaatttcttgtttcacttctttgttttccagaagcattggtaaca |
498 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10030653 |
agtttaatcctaccataaaaaataatattttggagttgattgaaaatctgcatattaatttcttgtttcacttctttgttttccagaagcattggtaaca |
10030554 |
T |
|
| Q |
499 |
tgttaattgacatttaaagctcaagaatcatttaatcaagaagagttgaagcacttgatttgctacacatcc |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10030553 |
tgttaattgacatttaaagctcaagaatcatttaatcaagaagagttgaagcatttgatttgctacacatcc |
10030482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 533
Target Start/End: Complemental strand, 6162528 - 6162446
Alignment:
| Q |
453 |
ttaatttcttgtttcacttcttt--gttttccagaagcattggtaacatgttaattgacatttaaagctcaagaatcatttaa |
533 |
Q |
| |
|
|||||||||||||||| || ||| |||||| |||||| ||| ||||| |||||||||||||||| | ||||| | ||||||| |
|
|
| T |
6162528 |
ttaatttcttgtttcatttttttttgttttctagaagctttgataacacgttaattgacatttaagggtcaagcaacatttaa |
6162446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 347 - 571
Target Start/End: Complemental strand, 35085958 - 35085733
Alignment:
| Q |
347 |
tttatatatctgaattctgatattgtggattggtgctcctaagccaatacatgagtttaatcataccataaaaaataatattttggagtt-attgaaaat |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
35085958 |
tttatatatctgaattctgatattgtggattggtgctcctaagccaattaatgagtttaatcataccataaaaaataatattttggagttgattgaaact |
35085859 |
T |
|
| Q |
446 |
ctgcatattaatttcttgtttcacttctttgttttccagaagcattggtaacatgttaattgacatttaaagctcaagaatcatttaatcaagaagagtt |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
35085858 |
ctgcatattaatttcttgtttcacttctttgttttccataagcattggtaacatgttaattgacatttaaagctcaagcaacatttaatcaagaagagtc |
35085759 |
T |
|
| Q |
546 |
gaagcacttgatttgctacacatcca |
571 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
35085758 |
gaagcacttgatttgctacacatcca |
35085733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 35086272 - 35086020
Alignment:
| Q |
7 |
attcttttgctatttattatactgaaacttattgtttttcattttcacttttacacaaatgagtgtaggaaatttgatg-----------ttttgttcga |
95 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||| ||||||| |||||||||||||| ||| |||||| |||||||||| |
|
|
| T |
35086272 |
attcttttgcttcttattatgctgaaacttattgtttttccttttcac------acaaatgagtgtagaaaagttgatgaatatggttggttttgttcga |
35086179 |
T |
|
| Q |
96 |
attgactacaagaaatgaaagtttataggcaagtttttcctagc-ttttaagttttaattgttaaagtagttgatgttgttttcatagtgtgtgtgcgc- |
193 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35086178 |
attgactacaagaaatgaaagcttatatgcaagtt---cctagccttttaagttttatttgttaaagtagttgatgttgttttcatagtgtgtgcgcgcg |
35086082 |
T |
|
| Q |
194 |
-----gcgtagtgcatatactc----gctacatagatatactcttgttcttttatatgatca |
246 |
Q |
| |
|
|||| |||||||||||| | |||||||||||||||||||| ||||||||||||| |
|
|
| T |
35086081 |
ctcgtgcgtggtgcatatactcaactgttacatagatatactcttgttattttatatgatca |
35086020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 349 - 571
Target Start/End: Original strand, 4896101 - 4896325
Alignment:
| Q |
349 |
tatatatctgaattctgatattgtggattggtgctcctaagccaatacatgagtttaatcataccataaaaaa-taatattttggagtt-attgaaaatc |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||| || |
|
|
| T |
4896101 |
tatatatctgaattctgatattgtggattggtgctcctaagcaaattaatgagtttaatcataccataaaaaaataatattttggtgttgattgaaactc |
4896200 |
T |
|
| Q |
447 |
tgcatattaatttcttgtttcacttctttgttttccagaagcattggtaacatgttaattgacatttaaagctcaagaatcatttaatcaagaagagttg |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
4896201 |
tgcatattaatttcttgtttcacttctttgttttccataatcatcggtaacatgttaattgacatttaaagctcaagcaacatttaatcaagaagagttg |
4896300 |
T |
|
| Q |
547 |
aagcacttgatttgctacacatcca |
571 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4896301 |
aagcacttgatttgctacacatcca |
4896325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 85 - 245
Target Start/End: Original strand, 4895863 - 4896036
Alignment:
| Q |
85 |
gttttgttcgaattgactacaagaaatgaaagtttataggcaagtttttcctagc-ttttaagttttaattgttaaagtagttgatgttgttttcatagt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4895863 |
gttttgttcgaattgactacaagaaatgaaagcttatatgcgagtttttcctagccttttaagttttaattgttaaagtagttgatgttgttttcatagt |
4895962 |
T |
|
| Q |
184 |
gtgtgtg--------cgcgcgtagtgcatatactc----gctacatagatatactcttgttcttttatatgatc |
245 |
Q |
| |
|
||||||| || |||| |||||||||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
4895963 |
gtgtgtgtgcgagcccgtgcgtggtgcatatactcaactgttacatagagatactcttgttcttttatatgatc |
4896036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 533
Target Start/End: Complemental strand, 21494567 - 21494487
Alignment:
| Q |
453 |
ttaatttcttgtttcacttctttgttttccagaagcattggtaacatgttaattgacatttaaagctcaagaatcatttaa |
533 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| || ||| |||||||||||||||||||||| | ||||| | ||||||| |
|
|
| T |
21494567 |
ttaatttcttgtttcacttttttgttttctagaggctttgataacatgttaattgacatttaagggtcaagcaacatttaa |
21494487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 8e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 386 - 569
Target Start/End: Original strand, 22830806 - 22830990
Alignment:
| Q |
386 |
taagccaatacatgagtttaatcataccataaaaaataatattttggagtt-attgaaaatctgcatattaatttcttgtttcacttctttgttttccag |
484 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22830806 |
taagccaataaatgagtttaattataccataaaaaataatattttggagttgattgaaaatctgcatattaattttttgtttcacttctttgttttccag |
22830905 |
T |
|
| Q |
485 |
aagcattggtaacatgttaattgacatttaaagctcaagaatcatttaatcaagaagagttgaagcacttgatttgctacacatc |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22830906 |
aagcattggtaacatgttaattgacatttaaagctcaagcaacatttaattaagaagagttgaagcacttgatttgctacacatc |
22830990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 453 - 533
Target Start/End: Original strand, 52630487 - 52630567
Alignment:
| Q |
453 |
ttaatttcttgtttcacttctttgttttccagaagcattggtaacatgttaattgacatttaaagctcaagaatcatttaa |
533 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||||||| | ||||| | ||||||| |
|
|
| T |
52630487 |
ttaatttcttgtttcacttttttgttttctagaagctttgataacatgttaattgacatttaagggtcaagcaacatttaa |
52630567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University