View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752-Insertion-8 (Length: 382)
Name: NF4752-Insertion-8
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752-Insertion-8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Original strand, 11250674 - 11251048
Alignment:
| Q |
8 |
gaaacagtatgcaacaannnnnnnattttctgatcatctcaaattgcattagttgttgtgtatgttgttcattgttgatattttaatgttggaattaaaa |
107 |
Q |
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| T |
11250674 |
gaaacagtatgcaacaatttctttattttctgatcatctcaaattgcattagttgttgtgtatgttgttcattgttgatattttaatgttggaattaaaa |
11250773 |
T |
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| Q |
108 |
tatgtcgtgagcgggaaaggcagagaagcaaaagttgaagttaaggtaactcaactatgaaaaagaaatggttagaacttagaagagataatcctagcaa |
207 |
Q |
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| T |
11250774 |
tatgtcgtgagcgggaaaggcagagaagcaaaagttgaagttaaggtaactcaactatgaaaaagaaatggttagaacttagaagagataatcctagcaa |
11250873 |
T |
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| Q |
208 |
taagcaatagaaatgatttgatatatttcactgctattggttctatgaatgtttagattgcaaaggaatttaccaaaagagtagaagtagtatcttttca |
307 |
Q |
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| T |
11250874 |
taagcaatagaaatgatttgatatatttcactgctattggttctatgaatgtttagattgcaaaggaatttaccaaaagagtagaggtagtatcttttcg |
11250973 |
T |
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| Q |
308 |
gttggaaaggagtatttggagggatagaatggatgcaaaataaggaaaaacaagcacaatgtcataatttttgtt |
382 |
Q |
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| T |
11250974 |
gttggaaaggagtatttggagggatagaatggatgcaaaataaggaaaaacaagcacaatgtcataatttttgtt |
11251048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 11248882 - 11248942
Alignment:
| Q |
186 |
ttagaagagataatcctagcaataagcaatagaaatgatttgatatatttcactgctattg |
246 |
Q |
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| T |
11248882 |
ttagaagagataatcctagcaataagcaatagaaattatttgatatatttcacttctattg |
11248942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 11248967 - 11249009
Alignment:
| Q |
251 |
tatgaatgtttagattgcaaaggaatttaccaaaagagtagaa |
293 |
Q |
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| T |
11248967 |
tatgaatgcttagattgcaaagaaatgtaccaaaagagtagaa |
11249009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 1108745 - 1108685
Alignment:
| Q |
186 |
ttagaagagataatcctagcaataagcaatagaaatgatttgatatatttcactgctattg |
246 |
Q |
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| T |
1108745 |
ttagaagagataatcctagcaataagcaatagaaatgatttgatatatttcacttctattg |
1108685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 291
Target Start/End: Complemental strand, 1107096 - 1106998
Alignment:
| Q |
197 |
aatcctagcaataagcaatagaaatgatttgatatatttcactgctattggt----tctatgaatgtttagattgcaaaggaatttaccaaaagagtag |
291 |
Q |
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| T |
1107096 |
aatcccagcagtaagcaatagaaatgatttgataaatttcagtgctattgctcgtatgaatgaatgtttagattgcaaagaaatttaccaaaagagtag |
1106998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 1107172 - 1107126
Alignment:
| Q |
52 |
tgcattagttgttgtgtatgttgttcattgttgatattttaatgttg |
98 |
Q |
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| T |
1107172 |
tgcattagttgttgtgcatgttgttcattgttgatatttcaatgttg |
1107126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 372
Target Start/End: Complemental strand, 1108607 - 1108522
Alignment:
| Q |
285 |
agagtagaagtag-tatcttttcagttggaaaggagtatttggagggatagaatggatgcaaaataaggaaaaacaagcacaatgtcat |
372 |
Q |
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| T |
1108607 |
agagtagaggtaggtatcatttcagttggagaggagtatt-ggagggatagaaag-acacaaaataag-aaaaacaagcacaatgtcat |
1108522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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